GPN for covid genome
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smruti241 commented
Can you please tell me how I can use gpn code for covid genome?
gonzalobenegas commented
Hello! You could try adapting the code here:
https://github.com/songlab-cal/gpn/tree/main/workflow/make_dataset_from_ncbi
GPN is still experimental and there are so many design choices. At this stage applying it to a new genome probably takes quite a bit of experimentation. One piece of advice would be to train on a diverse set of viruses, not just Covid strains.