google/deepsomatic
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
BSD-3-Clause
Issues
- 2
- 3
Using Singuarity to run deepsomatic
#29 opened by Coaxecva - 1
- 7
- 9
version 1.7.0 run failed
#26 opened by DayTimeMouse - 6
parallel: This job failed
#27 opened by Jiayi-Wang-Joey - 2
Where is source code?
#21 opened by jjv5 - 2
Tumor-normal mode with rnaseq data
#23 opened by gianfilippo - 2
Feature request: support panel-of-normals (PoN)
#25 opened by lbeltrame - 2
Feature request: allele depths in FORMAT
#24 opened by rowanhowellGE - 7
Compatibility of DeepSomatic Tumor-Only Mode for Short-Read RNA-Seq without Control Sample
#22 opened by Yousuk-Song - 0
Multiple regions of the genome?
#20 opened by vaibhakv - 7
Resuming interrupted run
#19 opened by kiranchari - 4
- 14
- 1
Feature request: Output normal allelic depth
#11 opened by proteinosome - 2
- 1
- 2
Output normal sample in the VCF
#14 opened by bcantarel - 1
- 3
- 2
Nanopore model availability
#12 opened by ChangqingW - 1
DeepSomatic without normal data
#13 opened by malonzm1 - 6
Unsuccessful TensorSliceReader constructor: Failed to find any matching files
#9 opened by lixingqiancs - 5
Depth of coverage for WGS
#6 opened by gevro - 5
why no heterozygous site
#3 opened by huangl07 - 2
PacBio case study
#5 opened by BiotechPedro - 1
Runing on Whole exome sequencing data
#4 opened by Cimorgh-IT - 3
It does clonal vs suclonal variants?
#2 opened by immuneAI - 1
Typo in readme?
#1 opened by davidmasp