fungs
Bioinformatics, open science, open source, software engineering, infrastructure and cloud IT
Chalmers University of Technology, Göteborg, SwedenDüsseldorf, Germany
Pinned Repositories
bam-readcount
count DNA sequence reads in BAM files
bbx-base
A simple bioboxes base image for Docker
bbx-cli
Command line interface for running bioboxes
biocode
Bioinformatics code libraries and scripts
cami-binning-eval
A biobox for CAMI binning evaluation
centrifuge
Classifier for metagenomic sequences
cyipopt
Cython interface for the interior point optimzer IPOPT
mglex
MGLEX – A Python Package for Probabilistic Modeling and Binning of Metagenomes
taxator-tk
A set of programs for the taxonomic analysis of genetic sequences
thesis-phd
PhD thesis: Computational Methods for Taxonomic Annotation and Genome Reconstruction in Metagenomics
fungs's Repositories
fungs/taxator-tk
A set of programs for the taxonomic analysis of genetic sequences
fungs/mglex
MGLEX – A Python Package for Probabilistic Modeling and Binning of Metagenomes
fungs/thesis-phd
PhD thesis: Computational Methods for Taxonomic Annotation and Genome Reconstruction in Metagenomics
fungs/bbx-base
A simple bioboxes base image for Docker
fungs/bam-readcount
count DNA sequence reads in BAM files
fungs/bbx-cli
Command line interface for running bioboxes
fungs/biocode
Bioinformatics code libraries and scripts
fungs/cami-binning-eval
A biobox for CAMI binning evaluation
fungs/centrifuge
Classifier for metagenomic sequences
fungs/cyipopt
Cython interface for the interior point optimzer IPOPT
fungs/feat-autobahn-python-httpheaders
WebSocket and WAMP in Python for Twisted and asyncio
fungs/hands-on-krakend
Demo repository for KrakenD API Gateway showcases and plugins
fungs/minibar
Progress bar for python
fungs/OrfM
simple and not slow ORF caller
fungs/owntone-server
Linux/FreeBSD DAAP (iTunes) and MPD media server with support for AirPlay 1 and 2 speakers (multiroom), Apple Remote (and compatibles), Chromecast, Spotify and internet radio.
fungs/pycogent
PyCogent: Official repository for software and unit tests
fungs/rfc
Request for comments on interchangeable bioinformatics containers
fungs/samtools-utilities
Hacked Utilities for Samtools
fungs/simplenote-electron
A Simplenote React app packaged via Electron for Windows and Linux
fungs/stockholm2cigar
Convert Stockholm alignments as output by HMMER to cigar strings