Pinned Repositories
abyss
Docker container for abyss genome assembler
biobox-builder-vm
A virtual machine to help authors create biobox images
bioboxes-py
Python library for creating and running bioboxes
bioboxes.org
The website for bioboxes
command-line-interface
Command line interface for running and verifying biobox images
commentary-article
Commentary article for gigascience
light-assembler
LightAssembler genome assembler
rfc
Request for comments on interchangeable bioinformatics containers
velvet
A reference implementation for a short read assembler
yaml2csv
bioboxes's Repositories
bioboxes/rfc
Request for comments on interchangeable bioinformatics containers
bioboxes/bioboxes.org
The website for bioboxes
bioboxes/command-line-interface
Command line interface for running and verifying biobox images
bioboxes/bioboxes-py
Python library for creating and running bioboxes
bioboxes/light-assembler
LightAssembler genome assembler
bioboxes/biobox-minimal-base
A minimal base image with biobox software installed
bioboxes/bioboxes-template
Template for creating a biobox Docker image
bioboxes/spades
bioboxes/yaml2csv
bioboxes/camiarquikr
bioboxes/CommonKmers
bioboxes/crash-test-biobox
Docker image for testing biobox tool interfaces
bioboxes/cwl_biobox_assemblers
bioboxes/cwl_biobox_profiling
bioboxes/cwl_playground
bioboxes/cwl_profiling_evaluation
bioboxes/data
bioboxes/fast-sga
bioboxes/file-validator
Validate that biobox.yaml files are correct.
bioboxes/focus
bioboxes/gaet
bioboxes/gatb-minia
GATB minia pipeline biobox
bioboxes/jgi-isolate-pipeline
bioboxes/jgi-single-cell-pipeline
Biobox of assembly pipeline used at the JGI for single cell data
bioboxes/megahit
bioboxes/quast
bioboxes/ray
bioboxes/shovill
Genome assembler pipeline using spades and fastq preprocessors
bioboxes/stride
bioboxes/unicycler