standage

standage's Stars

• streamlit/streamlit

  Streamlit — A faster way to build and share data apps.

  Language:Python35.7k3204.6k3.1k

• astral-sh/ruff

  An extremely fast Python linter and code formatter, written in Rust.

  Language:Rust32.7k815.5k1.1k

• astral-sh/uv

  An extremely fast Python package and project manager, written in Rust.

  Language:Rust26k563.9k762

• reactive-python/reactpy

  It's React, but in Python

  Language:Python7.9k60368318

• axa-group/Parsr

  Transforms PDF, Documents and Images into Enriched Structured Data

  Language:JavaScript5.8k81163310

• zedr/clean-code-python

  :bathtub: Clean Code concepts adapted for Python

  Language:Python4.4k16414779

• ahmetbersoz/chatgpt-prompts-for-academic-writing

  This list of writing prompts covers a range of topics and tasks, including brainstorming research ideas, improving language and style, conducting literature reviews, and developing research plans.

  3.2k384292

• gyli/PyWaffle

  🧇 Make Waffle Charts in Python.

  Language:Python583922106

• eweitz/ideogram

  Chromosome visualization for the web

  Language:JavaScript2942211671

• bluenote-1577/sylph

  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

  Language:Rust1863177

• onecodex/needletail

  Fast FASTX parsing and k-mer methods in Rust

  Language:Rust174225020

• roskakori/pygount

  count lines of code for hundreds of languages using pygments

  Language:Python16068022

• marbl/ModDotPlot

  Language:Python12011209

• mgalardini/pyseer

  SEER, reimplemented in python 🐍🔮

  Language:Python1111022227

• mmcguffi/pLannotate

  Webserver and command line tool for annotating engineered plasmids

  Language:Python106113320

• PacificBiosciences/trgt

  Tandem repeat genotyping and visualization from PacBio HiFi data

  Language:Rust10630438

• PathoScope/PathoScope

  Pathoscope: Species identification and strain attribution with unassembled sequencing data

  Language:Python54111726

• bbolker/gLLMglnlmvlvMMM

  a generative Large Language Model for generalized linear and nonlinear multivariate latent-variable multilevel/mixed modelling

  431291

• bluenote-1577/floria

  Strain-level haplotyping for metagenomes with short or long-reads.

  Language:Rust39531

• jordanlab/tagore

  The script presents a simple way to visualize features on human chromosome ideograms

  Language:Python39679

• at-cg/PanAligner

  Long read aligner for cyclic and acyclic pangenome graphs

  Language:C35434

• bluenote-1577/flopp

  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.

  Language:Rust353197

• broadinstitute/pyfrost

  Python bindings for Bifrost with a NetworkX compatible API

  Language:Python271371

• rust-seq/minimizer-iter

  Iterate over minimizers of a DNA sequence

  Language:Rust26512

• KevinKuchinski/ProbeTools

  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa

  Language:Python20412

• mpieva/mapAD

  An aDNA aware short-read mapper

  Language:Rust19400

• wejlab/MetaScope

  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

  Language:R167167

• FofanovLab/VaST

  Variant Site Strain Typer: Identifies the minimum number of variable genomic site that are required to resolve a group of related bacterial strains

  Language:Python6560

• calipho-sib/cellosaurus-STR-similarity-search-tool

  Tool to seach for similarity between a cell line STR markers and those stored in the Cellosaurus knowledge resource

  Language:Java31513

• bluenote-1577/plume

  Language:Rust120