onecodex/needletail

Issues

• Tests are missing from crate

  #81 opened a month ago by mr-c
  1

• Need a wheel for 3.12

  #84 opened a month ago by Thernn88
  0

• release version for mac os on PyPI?

  #80 opened 5 months ago by arogozhnikov
  0

• Integrate "Honor individual compression features" into a release

  #79 opened 7 months ago by PB-DB
  0

• Profile-Guided Optimization (PGO) benchmark results

  #72 opened 9 months ago by zamazan4ik
  2

• Support for zstd

  #71 opened a year ago by mbhall88
  0

• I am looking for a function that gives me an iterator over the read SequenceRecord's.

  #70 opened a year ago by stela2502
  2

• Random access a region in fasta file by `fai` index

  #68 opened a year ago by wjwei-handsome
  4

• how to retrieve file format(Fasta or Fastq) in Reader?

  #66 opened a year ago by wjwei-handsome
  2

• buf_redux not maintained and unsupported in future version

  #64 opened 2 years ago by jianshu93
  2

• How to re-open a fastq.gz file?

  #61 opened 2 years ago by stela2502
  1

• parallel parsing a lot of fasta files?

  #62 opened 2 years ago by jianshu93
  5

• Likely a stupid and easy to answer probem: Support for N characters.

  #60 opened 2 years ago by stela2502
  3

• string compress

  #59 opened 2 years ago by jianshu93
  1

• bit_kmers function will panic at 'attempt to multiply with overflow', if k-mer length is longer than 32 bp.

  #58 opened 3 years ago by yiolino
  7

• writing fastq - writer issues

  #55 opened 4 years ago by colindaven
  0

• just print sequence

  #54 opened 4 years ago by colindaven
  2

• Handling of empty files

  #51 opened 4 years ago by mbhall88
  2

• Tag a release for v0.4.0

  #50 opened 4 years ago by mbhall88
  1

• Benchmark against C implementations

  #34 opened 5 years ago by bovee
  1

• SequenceRecord is not intuitive

  #38 opened 4 years ago by bovee
  1

• Sequence parser callback return type

  #44 opened 4 years ago by mbhall88
  1

• Example for type_callback

  #43 opened 4 years ago by mbhall88
  5

• Add a new iterator to skip "bad" bases without canonicalization

  #40 opened 5 years ago by apcamargo
  3

• Support 2bit files

  #12 opened 6 years ago by bovee
  1

• Segfault with larger gzip files

  #35 opened 5 years ago by bovee
  1

• Support NA -> AA translation

  #33 opened 5 years ago by bovee
  2

• More Documentation

  #1 opened 5 years ago by bovee
  1

• Run tests on README

  #24 opened 5 years ago by bovee
  1

• File exporters

  #13 opened 5 years ago by bovee
  2

• competition

  #2 opened 5 years ago by kloetzl
  5

• Protein sequence support?

  #32 opened 5 years ago by olgabot
  4

• Redo performance profiling

  #15 opened 5 years ago by bovee
  2

• Newlines before first record

  #7 opened 5 years ago by bovee
  1

• Cargo fmt

  #17 opened 5 years ago by bovee
  4

• Relax unicode requirement on header lines

  #29 opened 5 years ago by bovee
  5

• Better error reporting on failures

  #19 opened 5 years ago by bovee
  1

• Add Format Specimens examples to repo

  #31 opened 5 years ago by bovee
  1

• Add streaming hash structures

  #30 opened 5 years ago by bovee
  1

• Sequence writers

  #28 opened 5 years ago by bovee
  1

• Do `proptest` testing

  #27 opened 5 years ago by bovee
  0

• Panic on invalid FASTA files missing last sequence record

  #25 opened 5 years ago by bovee
  0

• Use `MultiGzDecoder` instead of `GzDecoder`

  #21 opened 5 years ago by bovee
  0

• Bump to CircleCI 2.0 format

  #16 opened 6 years ago by boydgreenfield
  4

• Better API

  #18 opened 6 years ago by bovee
  2

• Support other compression standards

  #11 opened 6 years ago by bovee
  0

• Error on files with whitespace for FASTX records is unclear

  #8 opened 6 years ago by bovee
  0

• Bad FASTQ can cause a segfault rather than error

  #9 opened 7 years ago by boydgreenfield
  1

• Doesn't work with named pipes

  #4 opened 8 years ago by bovee
  1