standage/tag

Issues

• Error handling Parent attribute for features with multiple parents

  #84 opened 4 years ago by standage
  0

• GFF3Writer doesn't honor "retainids" mode

  #78 opened 5 years ago by standage
  0

• Implement collapse mode for bacterial annotation evaluation

  #76 opened 5 years ago by standage
  0

• Split out sorting behavior to a dedicated generator

  #45 opened 6 years ago by standage
  2

• Spitballing

  #51 opened 8 years ago by standage
  1

• The tag.mrna.primary selector fails on non-protein-coding genes

  #56 opened 8 years ago by standage
  0

• Decide how to handle (or not) duplicate exon entries

  #30 opened 8 years ago by standage
  2

• Module for validating gene features

  #54 opened 8 years ago by standage
  0

• New 'infer' module

  #39 opened 8 years ago by standage
  0

• Community-facing documentation

  #42 opened 8 years ago by standage
  0

• Add ParsEval test

  #15 opened 8 years ago by standage
  2

• FeatureIndex class

  #19 opened 8 years ago by standage
  1

• Better handling of feature score

  #47 opened 8 years ago by standage
  0

• GFF3Writer: ##FASTA directive

  #48 opened 8 years ago by standage
  0

• Generator analog of pmrna

  #41 opened 8 years ago by standage
  1

• Documentation of different conventions for encoding genes

  #40 opened 8 years ago by standage
  0

• Replace scripts with single-point-of-entry tag script

  #34 opened 8 years ago by standage
  0

• Add more tests for tag occ

  #36 opened 8 years ago by standage
  0

• Add some basic generators

  #33 opened 8 years ago by standage
  0

• Easier access to test data from tag.open

  #27 opened 8 years ago by standage
  0

• GFF3Reader should use tag.open instead of open

  #28 opened 8 years ago by standage
  0

• Improvements to unit tests

  #3 opened 8 years ago by standage
  2

• Reader and writer classes

  #18 opened 8 years ago by standage
  1

• Have GFF3Reader infer sequence-region pragmas

  #21 opened 8 years ago by standage
  0

• Migrate aeneas --> tag

  #16 opened 8 years ago by standage
  0

• Feature output doesn't handle all multifeatures correctly

  #12 opened 8 years ago by standage
  0

• Add versioneer

  #8 opened 8 years ago by standage
  0

• Improve setup.py

  #7 opened 8 years ago by standage
  0

• Sorting of all object types

  #1 opened 8 years ago by standage
  1

• Add FASTA handling to GFF3 reader

  #2 opened 8 years ago by standage
  0