gff3
There are 40 repositories under gff3 topic.
genometools/genometools
GenomeTools genome analysis system.
moshi4/pyGenomeViz
A genome visualization python package for comparative genomics
NAL-i5K/GFF3toolkit
Python programs for processing GFF3 files
NBISweden/EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
billzt/gff3sort
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
tjparnell/biotoolbox
Tools for querying and analysis of genomic data
BioInterchange/Ontologies
Home of the Genomic Feature and Variation Ontology (GFVO)
NCBI-Hackathons/Master_gff3_parser
Convert sequence IDs between ucsc/refseq/genbank
IPK-BIT/divbrowse
A web application for interactive visualization and exploratory data analysis of variant call matrices
biosustain/goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
vejnar/FONtools
JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
alejandrogzi/bed2gff
BED-to-GFF3 converter that runs in parallel
standage/tag
Genome annotation data analysis and management implemented in pure Python
fmalmeida/gff-toolbox
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
guokai8/gff2gene
Plot gene structure
NAL-i5K/AgBioData_GFF3_recommendation
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
DarisCappelletti/Gff3-tools
C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
dmyersturnbull/bioio
Micro-libraries for reading and writing genomic sequence data in various formats.
BioInterchange/BioInterchangeC
Genomic linked data converter. Interchange GFF, GVF, VCF files via JSON.
corwur/gfftoneo4j
Tools for importing GFF files to a Neo4J graph database
COMBAT-TB/tb2neo
A tool to aggregate and load TB data to Neo4j
erkinacar5/SortedNucleotideCounter
This code counts the mapped nucleotide number in given SAM file according to given GFF file.
Grelot/vcfsynonymous
read VCF and select synonymous or non-synonymous coding variants
hernanmd/hisat2_bovine
Scripts to index and align Bovine genome with HISAT2
holmrenser/gff_toolkit
tools for handling gff files
jakechamblee/BPROM_to_GFF3_converter
Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
AxelGiottonini/EMBLish
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
brettwhitty/bw-msu-tools
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
kcajj/human_genome_webapp
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
mcamagna/GFF2DDBJ
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
pguenzi-tiberi/script_trinotate_to_gff
A little script to print a gff3 file
scbirlab/bioino
💻 Interconverting FASTA, GFF, and CSV.
flyingicedragon/gff2gggenes
parse GFF and output a CSV file for gggenes. 解析并将 gff 中需要的内容输出到 csv 文件中以供 R 包 gggenes 调用。