papanikos

Professional stack overflow lurker

Pinned Repositories

cirtap
A command line utility for handling data from the PATRIC ftp site
Language:Python1 1 20
phap
A snakemake workflow wrapping various phage host prediction tools
Language:Python1 1 70
pvogs_function
A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.
Language:Python2 0 00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
DeepVirFinder
Identifying viruses from metagenomic data by deep learning
Language:Python01
dotfiles
My configs
Language:Lua00
MARVEL
MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
Language:Python0 0 20
papanikos
papanikos --help
00
refseqtools
Scripts for handling RefSeq release as a resource for sequence information
Language:Python1 1 13
rhizosphere_microbial_growthRates
This is where all scripts from 2022 paper on rhizosphere and copiotrophs association are stored
0 0 00

papanikos/refseqtools
Scripts for handling RefSeq release as a resource for sequence information
Language:Python1 1 13
papanikos/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
papanikos/DeepVirFinder
Identifying viruses from metagenomic data by deep learning
Language:Python01
papanikos/dotfiles
My configs
Language:Lua00
papanikos/MARVEL
MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
Language:Python0 0 20
papanikos/papanikos
papanikos --help
00
papanikos/rhizosphere_microbial_growthRates
This is where all scripts from 2022 paper on rhizosphere and copiotrophs association are stored
0 0 00
papanikos/vHULK
viral Host UnveiLing Kit (vHULK)
Language:Python0 0
papanikos/VirHostMatcher-Net
VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.
Language:Python0 0
papanikos/What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
Language:Nextflow