Pinned Repositories
agri-rcf.github.io
Faculty of Agriculture Core Facilities Website
automated-spheroid-detection
automated-spheroid-detection-and-live-dead-ratio-analysis
Automated Fiji macro for spheroid detection and live/dead ratio analysis in merged tif images, utilizing Cellpose segmentation with optional GPU support.
automatic-object-detection-with-PTBIOP-cellpose-wrapper-and-morphoLibJ
Bio-image_Analysis_with_Python
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Dual-Channel-Fluorescence-Image-Merger-with-Filename-Truncation
FIJI
Image Analysis scripts for FIJI - ImageJ
Ice-Crystal-Morphometry
Mouse-Brain-CFOS-Analysis
This script is designed for analyzing mouse brain sections for CFOS, based on Stardist DAPI segmentation.
Daniel-Waiger's Repositories
Daniel-Waiger/automatic-object-detection-with-PTBIOP-cellpose-wrapper-and-morphoLibJ
Daniel-Waiger/automated-spheroid-detection
Daniel-Waiger/automated-spheroid-detection-and-live-dead-ratio-analysis
Automated Fiji macro for spheroid detection and live/dead ratio analysis in merged tif images, utilizing Cellpose segmentation with optional GPU support.
Daniel-Waiger/Dual-Channel-Fluorescence-Image-Merger-with-Filename-Truncation
Daniel-Waiger/FIJI
Image Analysis scripts for FIJI - ImageJ
Daniel-Waiger/Ice-Crystal-Morphometry
Daniel-Waiger/Mouse-Brain-CFOS-Analysis
This script is designed for analyzing mouse brain sections for CFOS, based on Stardist DAPI segmentation.
Daniel-Waiger/agri-rcf.github.io
Faculty of Agriculture Core Facilities Website
Daniel-Waiger/Bio-image_Analysis_with_Python
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
Daniel-Waiger/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Daniel-Waiger/file-renamer
A Python tool to rename files by removing common and redundant parts while keeping unique identifiers intact, with a GUI for preview and confirmation.
Daniel-Waiger/personal-website