/Master-degree

Repo with all the files containing information regarding my research for the master degree

Primary LanguageJupyter Notebook

Master-degree

Repo with all the files containing information regarding my research for the masters degree

It only makes sense if you have acess to the Masters dissertation

Files

Metabolites.dat

File containing the atomic formula from the parts of the metabolites which doesn't contain atoms from derivatization process

Isotopes.dat

File containing information regarding natural abundances of the isotopes

Derivatives.dat

File containing the atomic formula from the parts of the metabolites which contain atoms from derivatization process

Klactis_manuscrito

File containing 1000 randon initial distributions for the model created using 13cMFA

AH_model.xml

File containing the metabolic model for BAP strain

convert_to_graph.ipynb

File containing steps to convert cobrapy model to a graph and an implementation of dijsktra's algorithm for it

Functions.ipynb

File containing new functions to help cobrapy analysis

Writing_model.py

Python 3.6 script tp create a fluxml file compatible with 13cfllux2