DannyArends
World-class geneticist, Lecturencer, ESPRIT Fanboy, and Associate Professor in Bioinformatics at Northumbria University.
Northumbria UniversityNewcastle upon Tyne - UK
Pinned Repositories
CalderaD
SDL2 Vulkan renderer for windows/linux/android in the D Programming Language (based on vulkan-tutorial.com)
CTLmapping
Correlated Trait Locus (CTL) mapping
D-coding
Basic tools written in the D programming language, to learn the language and test out idea's
DaNode
Small and flexible web server written using the D 2.0 language
GBIC
R packages developed by Groningen BioInformatics Centre
LLMstream
Repository for the Large Language Model stream on YouTube
genenetwork2
GeneNetwork (2nd generation)
GEMMA
Genome-wide Efficient Mixed Model Association
qtl
R/qtl: A QTL mapping environment
DannyArends's Repositories
DannyArends/D-coding
Basic tools written in the D programming language, to learn the language and test out idea's
DannyArends/GBIC
R packages developed by Groningen BioInformatics Centre
DannyArends/iqtl
Some tools and code I use in QTL mapping, and for testing R related code
DannyArends/PLINK2RQTL
Convert PLINK data to R/qtl format
DannyArends/rqtl-mqm
R/QTL with MQM support
DannyArends/3Dto2DApplet
Java project to create an applet/awt interface to render 3D gfx and 2D gui's
DannyArends/DannyArends.github.io
Testing github pages
DannyArends/happy
Fork of the Happy QTL mapping software source code
DannyArends/Other
A space to store some older projects and other stuff
DannyArends/qtlHD
Re-implementation of R/qtl with clean code, aimed at high-density, high-throughput data
DannyArends/beagle
Unofficial beagle 4.0/4.1 source code imported from http://faculty.washington.edu/browning/beagle/beagle.html
DannyArends/BLASTnParse
DannyArends/BSE
R package for calculating bridge sampling estimators
DannyArends/Code
DannyArends/DOQTL
QTL mapping for Divertiy Outbred mice (and other multi-founder advanced intercrosses)
DannyArends/genenetwork2_diet
Git source repo on a diet
DannyArends/ggplot2
An implementation of the Grammar of Graphics in R
DannyArends/gn2-docker
GeneNetwork2 development server installation
DannyArends/GNapi
R package for connecting to the GeneNetwork API
DannyArends/linreg
Multiple linear regression in D
DannyArends/ludeCode
Code I created for the analyse Affymetrix and Illumina arrays
DannyArends/Memphis
Code produced during my trip to Memphis (TN)
DannyArends/Minimac3
Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy.
DannyArends/SeedQualityQTL
Script used in "Visualizing the genetic landscape of Arabidopsis seed performance"
DannyArends/swift-app
Learning swift
DannyArends/swift-bindings
Bindings to external libraries for swift
DannyArends/systemsgenetics
Tools used by the genetics department of the UMCG for systems genetics analysis
DannyArends/Thesis
My PHD thesis