David-Peede/chimp_maf_to_vcf

Code to convert hg19.panTro6.synNet.maf.gz to an all sites VCF file where the only indiviual is panTro6 and is homozygous at every site. You can download the .maf file from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsPanTro6/hg19.panTro6.synNet.maf.gz

Python