Pinned Repositories
16S-analyses-with-QIIME
16Spipelines
Pipelines for 16S rRNA gene analysis
3Mcor
R-Metabolome-Microbiome-Meta Data Correlation Analysis
ACStudy
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
ancient-microbiome-denovo
ANI
Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
B8-multiomics
Chen2019SCLS
Arabidopsis Sesterterpene Modulate Root Microbiota related data and scripts
Multi-omics_elderly_pigs
This directory contains intermediate data files for the metagenomic, metabolomic, and lipidomic profiles of 45 pigs from three age groups, as well as all the code used for the analysis in the paper.
Dayueban's Repositories
Dayueban/Multi-omics_elderly_pigs
This directory contains intermediate data files for the metagenomic, metabolomic, and lipidomic profiles of 45 pigs from three age groups, as well as all the code used for the analysis in the paper.
Dayueban/ACStudy
Dayueban/ancient-microbiome-denovo
Dayueban/B8-multiomics
Dayueban/bee_BGA
Dayueban/Bifido_newborns
Dayueban/COVID-19
Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes
Dayueban/COVIDPBMC
Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
Dayueban/DMP
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
Dayueban/EasyAmplicon
Easy Amplicon data analysis pipeline
Dayueban/EasyMetagenome
Easy Metagenome Pipeline 2019 (1.0)
Dayueban/fiber
Dayueban/GeneLab_Data_Processing
Dayueban/Gout-script
Dayueban/Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
Dayueban/Host-dependent-co-evolution-of-supplemented-probiotic
The host-dependent co-evolution of supplemented probiotic and the indigenous gut microbiota
Dayueban/json-file
Dayueban/LOGODetect
LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
Dayueban/LungARGs
The antibiotic resistome of swine lower respiratory tract
Dayueban/magpipe
Dayueban/Manuscript-microbiota-ABO
Dayueban/metID
Construct database and identify metabolites.
Dayueban/microbiota-metabolite-associationscript
Dayueban/MultiOmicLand
MultiOmicLand is an R workflow that performs integrative analysis for microbiome-host multi-omic data, to identify microbiome-metabolite-host interaction links and generate hypotheses for microbial-host interaction.
Dayueban/PSP-omics
This directory contains intermediate data files for the 16S amplicon data, metabolomic, and transcriptomic profiles of rats from three groups, as well as all the code used for the analysis in the paper.
Dayueban/RothSchulze_pregnancy-gut-microbiome-T1D
Data, metadata and analyses performed in microbiome whole metagenomics sequencing data of women with and without T1D during pregnancy.
Dayueban/SARS-CoV-2-vaccination
Dayueban/SpatioTemporal_Analysis
This GitHub repository documents the findings of a spatiotemporal RNA-seq study on mouse brain aging, including 1,076 samples from 15 regions spanning 7 ages and two rejuvenating interventions.
Dayueban/uc-severity-multiomics
Dayueban/warming-network-complexity-stability
Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"