Pinned Repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bioinformatics-tutorials
bioinformatics_blog
cameron_schizophr_bull_2023_snATACseq
cameron_schizophr_bull_2023_snRNAseq
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
container_builds
fetal_brain_imprinting_290422
fetal_brain_snATACseq_V1_070222
fetal_brain_snRNAseq_110122
Dazcam's Repositories
Dazcam/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Dazcam/Bioinformatics-tutorials
Dazcam/bioinformatics_blog
Dazcam/cameron_schizophr_bull_2023_snATACseq
Dazcam/cameron_schizophr_bull_2023_snRNAseq
Dazcam/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
Dazcam/container_builds
Dazcam/Dazcam
Dazcam/DoubletDecon
A tool for removing doublets from single-cell RNA-seq data
Dazcam/fetal_brain_imprinting_290422
Dazcam/fetal_brain_snATACseq_V1_070222
Dazcam/fetal_brain_snRNAseq_110122
Dazcam/gene_reg_dev_human_brain
Dazcam/genotype-files-manipulations
Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
Dazcam/ISTAT
Computing statistics for overlapping sets of intervals
Dazcam/ldsc
LD Score Regression (LDSC)
Dazcam/Misc
Misc. utilities
Dazcam/pyflow-ATACseq
ATAC-seq snakemake pipeline
Dazcam/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Dazcam/RNAseqTools
Descriptions and Benchmarks for RNAseq tools
Dazcam/scRNAseq_clustering_comparison
A study to compare methods for clustering of scRNA-seq data
Dazcam/singlecell
Dissertation
Dazcam/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Dazcam/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
Dazcam/Stats
Dazcam/tdespec
An R package for generating gene expression specificity scores