DcShepherd

DcShepherd's Stars

• FrangakisLab/mcm-cryoet

  Mean curvature motion for cryo-electron tomograms

  Language:C7

• asarnow/relion-external

  Programs for Relion's "External" job interface

  Language:Python2

• asarnow/pyem

  Python programs for electron microscopy

  Language:Python11252

• nextpyp/cet_pick

  Cellular content mining and particle localization

  Language:Python3

• alncat/opusTomo

  structural heterogeneity analysis for cryo-ET subtomogram

  Language:Python5

• noushinha/DeepOrientation

  Deep Learning-based Orientation Estimation of Macromolecules in Cryo-electron tomography

  Language:Python1

• leeroyhannover/DeBCR

  DeBCR for microscopy Denoising/Deblurring/Deconvolution

  Language:Jupyter Notebook3

• czimaginginstitute/AreTomo3

  Live processing and real time reconstruction of cryo

  Language:C++121

• tomotools/tomotools

  Scripts to make cryo-electron tomography a bit easier

  Language:Python104

• hanjinliu/ChimeraX-command-palette

  A command palette widget for ChimeraX.

  Language:Python4

• cryoem/eman2

  A scientific image processing software suite with a focus on CryoEM and CryoET

  Language:Python14650

• VikParuchuri/marker

  Convert PDF to markdown quickly with high accuracy

  Language:Python16.4k920

• azazellochg/3DEM-conventions

  Conventions for 3DEM software packages

  Language:Python193

• warpem/warp

  Language:C#367

• davevanveen/unsup_cryoet

  completion of missing wedge w unsupervised coordinate nets

  41

• hanjinliu/cylindra

  Fourier analysis and subtomogram averaging of heterogenic cylindrical structures

  Language:Python8

• EuanPyle/dynamo2relion

  Converts Dynamo tables to star files for coordinate import into RELION 4.0

  Language:Python11

• dzyla/EPU_beamtiltclasses

  Very simple script for EPU users which adds beam tilt classes to the star file

  Language:Python11

• geoffwoollard/learn_cryoem_math

  Language:Jupyter Notebook11827

• DustinMorado/EPU_group_AFIS

  Makes RELION 3.1 Optics Groups from EPU AFIS data

  Language:Jupyter Notebook165

• dtegunov/membranorama

  A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.

  Language:C#141

• KosinskiLab/AlphaPulldown

  Language:Python19546

• cellcanvas/surforama

  a tool for using surfaces to explore volumetric data in napari

  Language:Python165

• alisterburt/mdocspoofer

  spoof mdoc files from tomo5 frames directories

  Language:Python11

• alisterburt/dynamo2m

  a bidirectional interface between Dynamo and the Warp-RELION-M pipeline

  Language:Python155

• cbmi-group/DeepETPicker

  Language:Python232

• turonova/cryoCAT

  Contextual Analysis Tools for cryoET and subtomogram averaging

  Language:Jupyter Notebook182

• teamtomo/cryoeraser

  Erase features from cryo-EM images in Python

  Language:Python3

• teamtomo/fidder

  Detect and erase gold fiducials in cryo-EM images

  Language:Python104

• CellArchLab/cryoet-scripts

  Miscellaneous scripts for processing cryo-ET data

  Language:Shell12