Pinned Repositories
3DCT
This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two dimensional SEM/FIB dual beam microscope images.
autolamella
autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
correlateim
Correlate images using matched control points. Based on https://github.com/adal02/cpselect
fibsem
A universal API for FIBSEM control
imagereg
GPU accelerated image registration
juno
juno is a simulation package for optical system design using full wave propagation.
napari-openfibsem
piescope
Back end library for PIE-scope integrated cryo-correlative light and FIB/SEM microscopy
piescope_gui
GUI for DeMarco lab FIB-SEM controls.
salami
salami is a python package for volume electron microscopy
DeMarcoLab's Repositories
DeMarcoLab/juno
juno is a simulation package for optical system design using full wave propagation.
DeMarcoLab/fibsem
A universal API for FIBSEM control
DeMarcoLab/autolamella
autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
DeMarcoLab/piescope_gui
GUI for DeMarco lab FIB-SEM controls.
DeMarcoLab/correlateim
Correlate images using matched control points. Based on https://github.com/adal02/cpselect
DeMarcoLab/piescope
Back end library for PIE-scope integrated cryo-correlative light and FIB/SEM microscopy
DeMarcoLab/salami
salami is a python package for volume electron microscopy
DeMarcoLab/3DCT
This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two dimensional SEM/FIB dual beam microscope images.
DeMarcoLab/imagereg
GPU accelerated image registration
DeMarcoLab/napari-openfibsem
DeMarcoLab/hachiko
An extremely simple asyncio-compatible wrapper around Watchdog.
DeMarcoLab/openCLEM
A universal API for Light Microscopy
DeMarcoLab/vulcan
grayscale lithography
DeMarcoLab/bandpass-filter-gui
A simple GUI to visualize bandpass filtering with different parameters.
DeMarcoLab/IMP
Integrated Microscopy and Proteomics
DeMarcoLab/imp_preprocessing_pipelines
Pipelines to create neuroglancer formats from EM data, along with segmentations or object lists. Raw output can be used in neuroglancer, or used in IMP project to have an interactive app.
DeMarcoLab/openfibsem-docs
Documentation site for the OpenFIBSEM project