DecodeGenetics/chopBAI

Issues

• Make it clear if CSI is supported as well as BAI

  #12 opened 9 years ago by peterjc
  0

• Mapped and placed counts in BAI not reported (samtools idxstats)

  #11 opened 9 years ago by peterjc
  4

• Document example with real world data

  #10 opened 9 years ago by peterjc
  3

• chopBAI does not include any functional tests

  #4 opened 9 years ago by peterjc
  0

• chopBAI does not use continuous integration testing

  #5 opened 9 years ago by peterjc
  1

• Option to create symlink to master BAM file?

  #9 opened 9 years ago by peterjc
  0

• Fails to accepts valid samtools style regions

  #2 opened 9 years ago by peterjc
  3

• Fails to accept regions where the reference has a colon

  #6 opened 9 years ago by peterjc
  1

• chopBAI --version and --help return failure error level

  #7 opened 9 years ago by peterjc
  2

• Fails to find example.bai for example.bam

  #3 opened 9 years ago by peterjc
  1

• compiler warnings: unused parameters

  #1 opened 9 years ago by peterjc
  2