Pinned Repositories
3D_met_NP_analysis
Image processing scripts written to analyze physiology and nanoparticle delivery to micro metastases. Published by Kingston et al. in "Evaluating micrometastases as a target for nanoparticles using 3D microscopy and machine learning” . 2019.
bert
TensorFlow code and pre-trained models for BERT
bioasq-biobert
Pre-trained Language Model for Biomedical Question Answering
clinicalBERT
repository for Publicly Available Clinical BERT Embeddings
CVode-wrapper-for-Matlab
The CVode package generates compiled MEX (Matlab Executables) files for the simulation of Ordinary Differential Equation (ODE) models, composed of systems of coupled nonlinear ODEs.
MatCL
OpenCL wrapper for Mathworks Matlab
md-davis
MD DaVis: A python package to analyze molecular dynamics trajectories of proteins
misc
network-dynamics
neural-ode
Jupyter notebook with Pytorch implementation of Neural Ordinary Differential Equations
DeepaMahm's Repositories
DeepaMahm/3D_met_NP_analysis
Image processing scripts written to analyze physiology and nanoparticle delivery to micro metastases. Published by Kingston et al. in "Evaluating micrometastases as a target for nanoparticles using 3D microscopy and machine learning” . 2019.
DeepaMahm/bert
TensorFlow code and pre-trained models for BERT
DeepaMahm/bioasq-biobert
Pre-trained Language Model for Biomedical Question Answering
DeepaMahm/clinicalBERT
repository for Publicly Available Clinical BERT Embeddings
DeepaMahm/CVode-wrapper-for-Matlab
The CVode package generates compiled MEX (Matlab Executables) files for the simulation of Ordinary Differential Equation (ODE) models, composed of systems of coupled nonlinear ODEs.
DeepaMahm/MatCL
OpenCL wrapper for Mathworks Matlab
DeepaMahm/md-davis
MD DaVis: A python package to analyze molecular dynamics trajectories of proteins
DeepaMahm/misc
DeepaMahm/network-dynamics
DeepaMahm/neural-ode
Jupyter notebook with Pytorch implementation of Neural Ordinary Differential Equations
DeepaMahm/ode45gpu
Demos of modification on original ode45, in order to easily do ODE propagation, on NVidia GPU, through MATLAB interface. No kernel, no C, no CUDA, no compile. Best for agile experiments!
DeepaMahm/pancreas-model
DeepaMahm/PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
DeepaMahm/PhysiPKPD
a module template for drug treatment in PhysiCell
DeepaMahm/Project_dynamics
DeepaMahm/sbinn
SBINN: Systems-biology informed neural network
DeepaMahm/SimpleCVODEWrapper
This is a C library that wraps CVODE in a simpler interface for solving system of differential equations.
DeepaMahm/surya
OCR and line detection in 90+ languages
DeepaMahm/torchdiffeq
Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.