DemonKiku

DemonKiku's Stars

• kaistcbfg/HiCAN

  Language:Python1

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k990

• Noble-Lab/trans-C

  Identifying sets of loci that interact strongly in trans

  Language:Python3

• mhammell-laboratory/TEtranscripts

  A package for including transposable elements in differential enrichment analysis of sequencing datasets.

  Language:Python22930

• hiclib/pastis

  Poisson-based algorithm for stable inference of DNA Structure

  Language:Python3415

• stjude/ROSE

  ROSE: RANK ORDERING OF SUPER-ENHANCERS

  Language:Python4312

• Yixf-Education/course_Systems_Biology

  天津医科大学，生物医学工程与技术学院，《系统生物学》课程资料

  Language:HTML1211

• freefq/free

  翻墙、免费翻墙、免费科学上网、免费节点、免费梯子、免费ss/v2ray/trojan节点、蓝灯、谷歌商店、翻墙梯子

  37.1k5.7k

• vpncn/vpncn.github.io

  2024**翻墙软件VPN推荐以及科学上网避坑，稳定好用。对比SSR机场、蓝灯、V2ray、老王VPN、VPS搭建梯子等科学上网与翻墙软件，**最新科学上网翻墙梯子VPN下载推荐，访问Chatgpt。

  Language:HTML16.2k1.5k

• cmdoret/hicreppy

  Python reimplementation of hicrep with compatibility for sparse matrices

  Language:Python172

• open2c/coolpuppy

  A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

  Language:Python7812

• Atvar2/plotHicGenome

  The tools are used for displaying hic signal of genome

  Language:Python225

• d2l-ai/d2l-en

  Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

  Language:Python24.1k4.4k

• d2l-ai/d2l-zh

  《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

  Language:Python64.1k11.1k

• robinweide/GENOVA

  GENome Organisation Visual Analytics

  Language:R7015

• yukaiquan/biotools

  I often use some of the self-written programs.

  Language:Python152

• alexanderepstein/Bash-Snippets

  A collection of small bash scripts for heavy terminal users

  Language:Shell9.7k841

• DyogenIBENS/Regulus

  Bioinformatics tools to identify cis-regulatory interactions in vertebrate genomes

  Language:Python61

• cryancampbell/centromere_seeker

  bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)

  Language:Shell127

• AnimalGenomicsETH/bovine-graphs

  Integrate multiple genome assemblies into a pangenome graph

  Language:Python326

• PlantDr430/FunFinder_Pangenome

  Data analysis of Funannotate and Orthofinder outputs to Pangenome results

  Language:Python175

• isabelschober/proteinortho_curves

  Draw pan- and core-genome curves from proteinortho output

  Language:R8

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python760186

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript868111

• kaieye/2022-Machine-Learning-Specialization

  Language:Jupyter Notebook4.4k1.7k

• wakilsarfaraz/PIQ

  Protein Interaction Quantification: An unsupervised machine learning algorithm for estimating protein interaction through epigenetic data. PIQ was initially developed in 2013/14 by Prof. D. Gifford's lab at MIT.

  Language:R3

• dice2o/BingGPT

  Desktop application of new Bing's AI-powered chat (Windows, macOS and Linux)

  Language:JavaScript9.3k711

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R388140

• XuanCao-CX/HiCAT

  Tools for Hi-C data analysis.

  Language:Python22

• XuanCao-CX/SigLoops

  Loop caller for Hi-C data.

  Language:Python12