Pinned Repositories
academy
Organized training examples for new WikiPathways authors
biomarkers
Biomarker collection.
BridgeDb
The BridgeDb Library source code
BridgeDb-matlab
bridgedb.github.io
Website of the BridgeDb project
BridgeDbR
BIoconductor R package for BridgeDb
BridgeDbtrials
create-bridgedb-diseases
Code to create local mapping files for disease IDs
cyNeo4J_DSMN
pathvisio
PathVisio - pathway editor, visualization and analysis software
DeniseSl22's Repositories
DeniseSl22/BridgeDb
The BridgeDb Library source code
DeniseSl22/BridgeDbR
BIoconductor R package for BridgeDb
DeniseSl22/create-bridgedb-diseases
Code to create local mapping files for disease IDs
DeniseSl22/create-bridgedb-interactions
DeniseSl22/create-bridgedb-metabolites
Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata
DeniseSl22/create-bridgedb-secondary2primary
DeniseSl22/cytargetlinker.github.io
CyTargetLinker website and tutorials
DeniseSl22/cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
DeniseSl22/cytoscape-wikipathways-app
WikiPathways app for Cytoscape to open and access pathways from WikiPathways
DeniseSl22/data
Repository to mimic the old data/gene_database/ API
DeniseSl22/datasources
Repository with the BridgeDb data source.
DeniseSl22/IBM_ASI_workflow
example_CWL_workflow
DeniseSl22/iem-subdomain
DeniseSl22/imd-pathway-curation
WikiPathways Curation for just the IMD pathways
DeniseSl22/libGPML
Java library for reading / writing GPML files
DeniseSl22/lipidmaps-wp-curation
Curation of lipid pathways
DeniseSl22/ontologies
The eNanoMapper ontology
DeniseSl22/pathvisio4-ant
DeniseSl22/PathVisioRPC
PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway statistics and exports results in various image formats. Since most major programming languages have a library/module providing XML-RPC functionality, this application enables users to access PathVisio functionality from their favourite analytical environment.
DeniseSl22/py-ssPA
Single sample pathway analysis tools for omics data
DeniseSl22/r-user-group
R User Group at Maastricht University
DeniseSl22/RCy3
New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
DeniseSl22/stories
BridgeDb Stories explain the various uses cases
DeniseSl22/swagger
Swagger file for bridgedbwebservice
DeniseSl22/the-fair-cookbook
The FAIR cookbook, containing recipes to make your data more FAIR. Find the rendered version on:
DeniseSl22/tiwid
This is where identifiers die
DeniseSl22/tool_pathway_viewer
Pathway viewer and highlighter hosted on WMCS
DeniseSl22/unit-ontology
An ontology of units of measurements
DeniseSl22/WikiPathwaysCurator
Unit tests that validate the WikiPathways content and support the curation of the knowledge base.
DeniseSl22/Workshop1