Pinned Repositories
ag1000g-phase2-vgsc-report
Analysis of the Vgsc gene as part of Ag1000G phase 2.
agam-report-base
agam-vgsc-report
Report on genetic variation within the voltage-gated sodium channel gene in Anopheles gambiae
AgamPrimer
Primer Design in Anopheles gambiae considering genetic variation
AMR-Bio-Africa-2022
anopheles-genomic-surveillance.github.io
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
binder
Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.
BOSS-Events
Core repo for OpenScienceKE and BHKi joint events funded by Code for Science & Society (CS&S)
DeribaAbera1234's Repositories
DeribaAbera1234/AgamPrimer
Primer Design in Anopheles gambiae considering genetic variation
DeribaAbera1234/anopheles-genomic-surveillance.github.io
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
DeribaAbera1234/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
DeribaAbera1234/binder
Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.
DeribaAbera1234/BOSS-Events
Core repo for OpenScienceKE and BHKi joint events funded by Code for Science & Society (CS&S)
DeribaAbera1234/COG-Train_Resources
cogtrain_resources
DeribaAbera1234/epi2me-api
API for communicating with the EPI2ME Platform for nanopore data analysis. Used by EPI2ME Agent & CLI.
DeribaAbera1234/gatk
Official code repository for GATK versions 4 and up
DeribaAbera1234/GSBAfrica2023
GSBAfrica course manual site
DeribaAbera1234/h3agwas
GWAS Pipeline for H3Africa
DeribaAbera1234/HaplotypR
DeribaAbera1234/hmmIBD
A hidden Markov model for detecting segments of shared ancestry (identity by descent)
DeribaAbera1234/ipyleaflet
A Jupyter - Leaflet.js bridge
DeribaAbera1234/labs
Rmd source files for the HarvardX series PH525x
DeribaAbera1234/mad4hatter
DeribaAbera1234/malariaAtlas
An R interface to open-access malaria data, hosted by the Malaria Atlas Project.
DeribaAbera1234/malariagen-data-python
A Python package providing convenience functions for accessing MalariaGEN data.
DeribaAbera1234/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
DeribaAbera1234/metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
DeribaAbera1234/NGS23
DeribaAbera1234/NGSBio_Hinx_2023
DeribaAbera1234/node-accreditation
Collection of scripts and items for node accreditation
DeribaAbera1234/OpenScienceKE
Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.
DeribaAbera1234/pipelines
Pipelines for processing malaria parasite and mosquito genome sequence data.
DeribaAbera1234/popgen
Scripts for Population Genetic Analysis of any genotype data
DeribaAbera1234/Python4BioinformaticsV2
Updated materials for MSc Bioinformatics for Pwani University
DeribaAbera1234/ReproducibleResearchRStudio
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
DeribaAbera1234/SingleCell_23
DeribaAbera1234/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
DeribaAbera1234/training
Nextflow training material