Pinned Repositories
accelerated_sampling_with_autoencoder
Accelerated sampling framework with autoencoder-based method
alphafold
Open source code for AlphaFold.
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
ANN_Force
ANN force plugin for OpenMM with native CUDA support
ArtificialIntelligenceEngines
Computer code collated for use with Artificial Intelligence Engines book by JV Stone
ATI-Feb20
graphtime
Encoding of transition probabilities with undirected graphical models
instance-segmentation-with-discriminative-loss-tensorflow
Tensorflow implementation of "Semantic Instance Segmentation with a Discriminative Loss Function"
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
sandres
SAnDReS (Statistical Analysis of Docking Results and Scoring functions) is a free and open-source (GNU General Public License) computational environment for the development of machine-learning models for the prediction of ligand-binding affinity. We developed SAnDReS using Python programming language, and SciPy, NumPy, scikit-learn, and Matplotlib libraries as a computational tool to explore the scoring function space.
DerienFe's Repositories
DerienFe/sandres
SAnDReS (Statistical Analysis of Docking Results and Scoring functions) is a free and open-source (GNU General Public License) computational environment for the development of machine-learning models for the prediction of ligand-binding affinity. We developed SAnDReS using Python programming language, and SciPy, NumPy, scikit-learn, and Matplotlib libraries as a computational tool to explore the scoring function space.
DerienFe/alphafold
Open source code for AlphaFold.
DerienFe/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
DerienFe/biosimspace_tutorials
A tutorials suite for BioSimSpace.
DerienFe/Chemformer
DerienFe/cleanrl
High-quality single file implementation of Deep Reinforcement Learning algorithms with research-friendly features (PPO, DQN, C51, DDPG, TD3, SAC, PPG)
DerienFe/coding-interview-university
A complete computer science study plan to become a software engineer.
DerienFe/DALLE2-pytorch
Implementation of DALL-E 2, OpenAI's updated text-to-image synthesis neural network, in Pytorch
DerienFe/decision-transformer
Official codebase for Decision Transformer: Reinforcement Learning via Sequence Modeling.
DerienFe/Deep-Reinforcement-Learning-Algorithms-with-PyTorch
PyTorch implementations of deep reinforcement learning algorithms and environments
DerienFe/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
DerienFe/deeplearning-crypto
Evaluation of novel deep learning models for cryptocurrency price forecasting
DerienFe/DMPfold
De novo protein structure prediction using iteratively predicted structural constraints
DerienFe/DMPfold2
Fast and accurate protein structure prediction
DerienFe/enhanced-sampling-workshop-2022
DerienFe/finetuna
Active Learning for Machine Learning Potentials
DerienFe/hashlips_art_engine
HashLips Art Engine is a tool used to create multiple different instances of artworks based on provided layers.
DerienFe/histone-mark-imputation
Repo for the histone imputation project.
DerienFe/llama
Inference code for LLaMA models
DerienFe/minGPT
A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training
DerienFe/molearn
protein conformational spaces meet machine learning
DerienFe/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
DerienFe/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
DerienFe/openmm_workshop
DerienFe/ProtMamba-ssm
ProtMamba: a homology-aware but alignment-free protein state space model
DerienFe/Q-Value-RL
Q-Value (Reinforcement Learning) on Grid World
DerienFe/reactfolio
Reactfolio is a sleek and responsive personal portfolio template built using React, perfect for showcasing your work and skills in a professional manner.
DerienFe/RL_MFPT
Edina lab start excercise: fix the matlab code.
DerienFe/rlkit
Collection of reinforcement learning algorithms
DerienFe/time-series-forecasting-pytorch
Acquiring data from Alpha Vantage and predicting stock prices with PyTorch's LSTM