Pinned Repositories
accelerated_sampling_with_autoencoder
Accelerated sampling framework with autoencoder-based method
alphafold
Open source code for AlphaFold.
alphafold3
AlphaFold 3 inference pipeline.
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
ANN_Force
ANN force plugin for OpenMM with native CUDA support
ArtificialIntelligenceEngines
Computer code collated for use with Artificial Intelligence Engines book by JV Stone
graphtime
Encoding of transition probabilities with undirected graphical models
instance-segmentation-with-discriminative-loss-tensorflow
Tensorflow implementation of "Semantic Instance Segmentation with a Discriminative Loss Function"
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
sandres
SAnDReS (Statistical Analysis of Docking Results and Scoring functions) is a free and open-source (GNU General Public License) computational environment for the development of machine-learning models for the prediction of ligand-binding affinity. We developed SAnDReS using Python programming language, and SciPy, NumPy, scikit-learn, and Matplotlib libraries as a computational tool to explore the scoring function space.
DerienFe's Repositories
DerienFe/alphafold3
AlphaFold 3 inference pipeline.
DerienFe/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
DerienFe/biosimspace_tutorials
A tutorials suite for BioSimSpace.
DerienFe/chai-lab
Chai-1, SOTA model for biomolecular structure prediction
DerienFe/Chemformer
DerienFe/cleanrl
High-quality single file implementation of Deep Reinforcement Learning algorithms with research-friendly features (PPO, DQN, C51, DDPG, TD3, SAC, PPG)
DerienFe/coding-interview-university
A complete computer science study plan to become a software engineer.
DerienFe/decision-transformer
Official codebase for Decision Transformer: Reinforcement Learning via Sequence Modeling.
DerienFe/Deep-Reinforcement-Learning-Algorithms-with-PyTorch
PyTorch implementations of deep reinforcement learning algorithms and environments
DerienFe/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
DerienFe/deeplearning-crypto
Evaluation of novel deep learning models for cryptocurrency price forecasting
DerienFe/dl_binder_design
DerienFe/DMPfold2
Fast and accurate protein structure prediction
DerienFe/enhanced-sampling-workshop-2022
DerienFe/finetuna
Active Learning for Machine Learning Potentials
DerienFe/latent-diffusion
High-Resolution Image Synthesis with Latent Diffusion Models
DerienFe/llama
Inference code for LLaMA models
DerienFe/minGPT
A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training
DerienFe/molearn
protein conformational spaces meet machine learning
DerienFe/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
DerienFe/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
DerienFe/openmm_workshop
DerienFe/ProtMamba-ssm
ProtMamba: a homology-aware but alignment-free protein state space model
DerienFe/Q-Value-RL
Q-Value (Reinforcement Learning) on Grid World
DerienFe/reactfolio
Reactfolio is a sleek and responsive personal portfolio template built using React, perfect for showcasing your work and skills in a professional manner.
DerienFe/RFdiffusion
Code for running RFdiffusion
DerienFe/RL_MFPT
Edina lab start excercise: fix the matlab code.
DerienFe/score_sde
Official code for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
DerienFe/score_sde_pytorch
PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
DerienFe/time-series-forecasting-pytorch
Acquiring data from Alpha Vantage and predicting stock prices with PyTorch's LSTM