T3D3 too soft
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victorkemp commented
The ends of the element seems to be connected to constraints, other truss elements, and forces by only the corner nodes so their stiffness is lower than what you specify.
*NODE
1,0,0.0005,0
2,0,0.00025,0
3,0,0.00075,0
4,0,0.001,0
5,0,0,0
*ELEMENT,TYPE=T3D3,ELSET=Eall
1,1,3,4
2,5,2,1
*MATERIAL,NAME=Material
*ELASTIC,TYPE=ISOTROPIC
2000000000,0
*SOLID SECTION,ELSET=Eall,MATERIAL=Material
4E-08
*BOUNDARY
4,1,3,0
*STEP
*STATIC
*CLOAD
5,2,-10
*NODE FILE,GLOBAL=YES,OUTPUT=3D
U
*END STEP
The axial displacement should be
u = F L / (E A)
= -10×0.001/(2e9×4e-8)
= -0.000125
but it's more like -0.00022