DiegoGBassani's Stars
unep-grid/mapx
MapX
unige-geohealth/accessmod
accessmod 5 : anisotropic accessibility analysis.
unige-geohealth/inAccessMod
ciesin-geospatial/GRID3_GHFD
repo to support WHO Global Health Facility Database
ciesin-geospatial/GRID3_public
Opensource repository for grid3 projects
novelt/building-aggregation-tool
terraframe/common-geo-registry-specification
shreyasgm/glocal
Code for creating Glocal aggregations data
worldbank/health-equity-diagnostics
posfaim/randLPN
Code accompanying arXiv:2211.13265
posfaim/physnets_as_net-o-nets
DataForScience/epidemik
Compartmental Epidemic Models in Python
yraeth/bnet-snet
laurent22/massren
massren - easily rename multiple files using your text editor
Saurabh7Goku/SkimLit
In this project, we're going to be putting what we've learned into practice. More specificially, we're going to be replicating the deep learning model behind the 2017 paper [*PubMed 200k RCT: a Dataset for Sequenctial Sentence Classification in Medical Abstracts*](https://arxiv.org/abs/1710.06071). When it was released, the paper presented a new dataset called PubMed 200k RCT which consists of ~200,000 labelled Randomized Controlled Trial (RCT) abstracts. The goal of the dataset was to explore the ability for NLP models to classify sentences which appear in sequential order. In other words, given the abstract of a RCT, what role does each sentence serve in the abstract?  *Example inputs ([harder to read abstract from PubMed](https://pubmed.ncbi.nlm.nih.gov/28942748/)) and outputs ([easier to read abstract](https://pubmed.ncbi.nlm.nih.gov/32537182/)) of the model we're going to build. The model will take an abstract wall of text and predict the section label each sentence should have.* ### Model Input For example, can we train an NLP model which takes the following input (note: the following sample has had all numerical symbols replaced with "@"): > To investigate the efficacy of @ weeks of daily low-dose oral prednisolone in improving pain , mobility , and systemic low-grade inflammation in the short term and whether the effect would be sustained at @ weeks in older adults with moderate to severe knee osteoarthritis ( OA ). A total of @ patients with primary knee OA were randomized @:@ ; @ received @ mg/day of prednisolone and @ received placebo for @ weeks. Outcome measures included pain reduction and improvement in function scores and systemic inflammation markers. Pain was assessed using the visual analog pain scale ( @-@ mm ). Secondary outcome measures included the Western Ontario and McMaster Universities Osteoarthritis Index scores , patient global assessment ( PGA ) of the severity of knee OA , and @-min walk distance ( @MWD )., Serum levels of interleukin @ ( IL-@ ) , IL-@ , tumor necrosis factor ( TNF ) - , and high-sensitivity C-reactive protein ( hsCRP ) were measured. There was a clinically relevant reduction in the intervention group compared to the placebo group for knee pain , physical function , PGA , and @MWD at @ weeks. The mean difference between treatment arms ( @ % CI ) was @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; and @ ( @-@ @ ) , p < @ , respectively. Further , there was a clinically relevant reduction in the serum levels of IL-@ , IL-@ , TNF - , and hsCRP at @ weeks in the intervention group when compared to the placebo group. These differences remained significant at @ weeks. The Outcome Measures in Rheumatology Clinical Trials-Osteoarthritis Research Society International responder rate was @ % in the intervention group and @ % in the placebo group ( p < @ ). Low-dose oral prednisolone had both a short-term and a longer sustained effect resulting in less knee pain , better physical function , and attenuation of systemic inflammation in older patients with knee OA ( ClinicalTrials.gov identifier NCT@ ). ### Model output And returns the following output: ``` ['###24293578\n', 'OBJECTIVE\tTo investigate the efficacy of @ weeks of daily low-dose oral prednisolone in improving pain , mobility , and systemic low-grade inflammation in the short term and whether the effect would be sustained at @ weeks in older adults with moderate to severe knee osteoarthritis ( OA ) .\n', 'METHODS\tA total of @ patients with primary knee OA were randomized @:@ ; @ received @ mg/day of prednisolone and @ received placebo for @ weeks .\n', 'METHODS\tOutcome measures included pain reduction and improvement in function scores and systemic inflammation markers .\n', 'METHODS\tPain was assessed using the visual analog pain scale ( @-@ mm ) .\n', 'METHODS\tSecondary outcome measures included the Western Ontario and McMaster Universities Osteoarthritis Index scores , patient global assessment ( PGA ) of the severity of knee OA , and @-min walk distance ( @MWD ) .\n', 'METHODS\tSerum levels of interleukin @ ( IL-@ ) , IL-@ , tumor necrosis factor ( TNF ) - , and high-sensitivity C-reactive protein ( hsCRP ) were measured .\n', 'RESULTS\tThere was a clinically relevant reduction in the intervention group compared to the placebo group for knee pain , physical function , PGA , and @MWD at @ weeks .\n', 'RESULTS\tThe mean difference between treatment arms ( @ % CI ) was @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; and @ ( @-@ @ ) , p < @ , respectively .\n', 'RESULTS\tFurther , there was a clinically relevant reduction in the serum levels of IL-@ , IL-@ , TNF - , and hsCRP at @ weeks in the intervention group when compared to the placebo group .\n', 'RESULTS\tThese differences remained significant at @ weeks .\n', 'RESULTS\tThe Outcome Measures in Rheumatology Clinical Trials-Osteoarthritis Research Society International responder rate was @ % in the intervention group and @ % in the placebo group ( p < @ ) .\n', 'CONCLUSIONS\tLow-dose oral prednisolone had both a short-term and a longer sustained effect resulting in less knee pain , better physical function , and attenuation of systemic inflammation in older patients with knee OA ( ClinicalTrials.gov identifier NCT@ ) .\n', '\n'] ```
hyo9292/AI-in-Health-Conflict-of-Interest
Transparency around conflicts of interest (COI) among re-searchers is important for maintaining the integrity of science, as well as public trust in scientific endeavors. COI disclosures are a required part of most publications, but understanding the connections between these disclosure statements and re-searchers’ findings can be challenging given the enormous number of scientific publications. Here, we seek to make progress toward automatic understanding of COI statements so that network models may be built in the future to aid in the understanding of COIs’ effects on scientific findings.
phillipecardenuto/upm
This repository offers a promising solution to identify fraudulent manuscripts, and it could be a valuable tool for supporting scientific integrity. Its code was developed aiming to identify suspect paper mill cases.
danielmoreira/sciint
Source codes and experimental results of our scientific integrity verification system.
opengeos/Awesome-GEE
A curated list of Google Earth Engine resources
instedd/planwise
PlanWise applies algorithms and geospatial optimisation techniques to existing data on population, road networks and health facilities, so health care planners can better understand the unmet health needs of their constituents and better locate future health facilities.
worldbank/GOSTnetsraster
Calculating market access using raster surfaces of friction or travel time
seb310/urban_boundary_delineation
Code for the fast greedy heuristic used in "Urban Boundary Delineation from Commuting Data with Bayesian Stochastic Blockmodeling: Scale, Contiguity, and Hierarchy"
randrescastaneda/dotemplate
dotemplate Creates template for do-files. Two different type of template are provided. dotemplate is useful for being organized as programmer and standardize do-files among a team or group of programmers. If any of the options above is not specified, dotemplate will request for them. The user could press Enter from the keyboard if no information is desired to be prompted, or type in the Stata commands window the specific information.
BBieri/StataProjectTemplate
Simple Stata Project Template
PovertyAction/high-frequency-checks
A Stata template for running high frequency checks of incoming research data at Innovations for Poverty Action
skhiggins/Stata_guide
Stata instructions for research projects
haghish/github
a module for building, searching, installing, managing, and mining Stata packages from GitHub
lukestein/stata-latex-workflows
Stata Workflows for LaTeX Output
mcaceresb/stata-gtools
Faster implementation of Stata's collapse, reshape, xtile, egen, isid, and more using C plugins
loicleray/WOAH_WAHIS.ReportRetriever
Automatically download publicly available animal disease reports from the World Organisation for Animal Health WAHIS database.