Digital Slide Archive
Tools for the management, visualization, and analysis of digital pathology data.
Atlanta, GA, USA
Pinned Repositories
CNNCellDetection
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
digitalslidearchive.info
Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK
DSA-WSI-DeID
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
HistomicsStream
A whole-slide image reader for TensorFlow
HistomicsTK
A Python toolkit for pathology image analysis algorithms.
HistomicsUI
A Girder plugin for pathology image annotations and analysis.
ImageDePHI
superpixel-classification
A test cli for classifying superpixels with arbitrary labels
tifftools
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
Digital Slide Archive's Repositories
DigitalSlideArchive/HistomicsTK
A Python toolkit for pathology image analysis algorithms.
DigitalSlideArchive/digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
DigitalSlideArchive/HistomicsUI
A Girder plugin for pathology image annotations and analysis.
DigitalSlideArchive/tifftools
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
DigitalSlideArchive/CNNCellDetection
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
DigitalSlideArchive/HistomicsStream
A whole-slide image reader for TensorFlow
DigitalSlideArchive/DSA-WSI-DeID
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
DigitalSlideArchive/ImageDePHI
DigitalSlideArchive/ALBench
Benchmarking tool for evaluating Active Learning strategies for machine learning
DigitalSlideArchive/superpixel-classification
A test cli for classifying superpixels with arbitrary labels
DigitalSlideArchive/annotation-tracker
A Girder plugin for annotation tracking in HistomicsUI
DigitalSlideArchive/HistomicsDetect
A package for cell detection models using TensorFlow
DigitalSlideArchive/large-image-utilities
Experimental utilities for use with large_image
DigitalSlideArchive/dsa-run-custom-ai-models
DigitalSlideArchive/girder_volview
DigitalSlideArchive/histomics-label
A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images
DigitalSlideArchive/ImageDePHI-Phase-I
Whole Slide Image Deidentification for PHI
DigitalSlideArchive/import-tracker
A Girder plugin for data import tracking in HistomicsUI
DigitalSlideArchive/large_image_source_isyntax
A large_image source using the Philips library for isyntax files
DigitalSlideArchive/dive-dsa
DIVE for Digital Slide Archive
DigitalSlideArchive/girder-client-mount
DigitalSlideArchive/histomicstk-extras
DigitalSlideArchive/histomicstk-similarity
Identify similar tissue within an image using foundational models
DigitalSlideArchive/histoqc-dsa-plugin
DigitalSlideArchive/girder-clamav
DigitalSlideArchive/girder_assetstore
A Girder plugin for connecting remote Girder instances as Assetstores
DigitalSlideArchive/histomics-tour
DigitalSlideArchive/histomics_aws_deployment
Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS
DigitalSlideArchive/histomics_load_testing
DigitalSlideArchive/HTAN