/pycistarget

pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.

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pycistarget

pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.

Installation

To install pycistarget:

pip install git+https://github.com/DingWB/pycistarget.git

Check version

To check your pycistarget version:

import pycistarget
pycistarget.__version__

Tutorials & documentation

Tutorial and documentation are available at https://pycistarget.readthedocs.io/.

Questions?

  • If you have technical questions or problems, such as bug reports or ideas for new features, please open an issue under the issues tab.
  • If you have questions about the interpretation of results or your analysis, please start a Discussion under the Discussions tab.

Reference

Bravo Gonzalez-Blas, C. & De Winter, S. et al. (2022). SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks