DipeshNiraula/Intracellular-Information-Dynamics

Cell as a quasi-physical grid-graph for emulating spatiotemporally resolved intracellular information flow.

Intracellular Information Dynamics

A grid-graph based cellular reservoir model for emmulating spatiotemporally resolved intracellular information flow and for learning cellular response to extracellular ionic perturbation.

Create a folder named plot in the working directory before running the codes. Run the codes in following sequence:

1. Intracellular_Information_Dynamics.py
2. Cellular_Decision_Making.py
3. Cellular_Decision_Making_Application.py
4. CellReservoir_Properties.py

Related Manuscript

• Niraula, D., El Naqa, I., Tuszynski, J.A., Gatenby, R.A., Modeling non-genetic information dynamics in cells using reservoir computing, ISCIENCE (2024)