pytest shows many errors (macOS ARM64)
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isolated-matrix commented
Describe the bug
I tried to install fpocket. Unfortunately, the pytest report was not encouraging. The summary reads:
================================================== test session starts ==================================================
platform darwin -- Python 3.12.7, pytest-8.3.2, pluggy-1.5.0
rootdir: /Users/***/git_repos/fpocket
plugins: hypothesis-6.112.0
collected 11 items
tests/test_fpocket.py F...FFF [ 63%]
tests/test_mmcif.py FFFF [100%]
================================================ short test summary info ================================================
FAILED tests/test_fpocket.py::test_pdb_list_equal - AssertionError: assert False
FAILED tests/test_fpocket.py::test_drop_chain - AssertionError: assert False
FAILED tests/test_fpocket.py::test_explicit_pocket_detection - assert 19 == 15
FAILED tests/test_fpocket.py::test_chain_as_ligand - assert 120 == 118
FAILED tests/test_mmcif.py::test_pdb_list_mmcif_equal - AssertionError: assert False
FAILED tests/test_mmcif.py::test_pdb_list_mmcif_both - AssertionError: assert False
FAILED tests/test_mmcif.py::test_pdb_list_mmcif_plus_db - assert 89 == 85
FAILED tests/test_mmcif.py::test_mmcif_ligand - assert 19 == 15
============================================= 8 failed, 3 passed in 30.45s ==============================================
I'm not quite sure what these errors refer to, or how to fix them. I followed the installation instructions and compiled via the make ARCH=MACOSXARM64
and sudo make install
commands.
Desktop (please complete the following information):
- OS: macOS 15.0.1
- Browser: Safari
Additional context
There was a warning during the initial stage of the installation which might be related... In the output generated following the make ARCH=MACOSXARM64
command, a 'warning' popped up saying:
src/mdpocket.c:49:30: warning: unused parameter 'v' [-Wunused-parameter]
49 | static int register_cb(void *v, vmdplugin_t *p) {
| ^
1 warning generated.
I'm not sure if it's related though.