Discngine/fpocket

Issues

• pytest shows many errors (macOS ARM64)

  #158 opened 3 months ago by isolated-matrix
  0

• Segmentation fault with explicit fpocket & 8ues

  #155 opened 4 months ago by f-allain
  1

• No atom found when processing cif file 2po6

  #151 opened 4 months ago by xvlaurent
  3

• How do I extract the following information from the output: center_x ，enter_y，center_z =，size_x =size_y = ，size_z

  #156 opened 4 months ago by xing9133
  0

• Provide Windows build

  #106 opened 2 years ago by colingcresset
  4

• fpocket returns "pdbxplugin) Error while trying to parse pdbx structure" on 7o6x.cif

  #153 opened 5 months ago by PeyratG
  1

• Calculating Polarity Score

  #152 opened 6 months ago by louetadelie1
  0

• Some questions about the software

  #139 opened 6 months ago by CathalBio
  1

• Get volume of a single tunnel in several similar proteins and limit tunnel length outwards

  #149 opened 7 months ago by GuhLelouch
  1

• What are the occupancy and B-factor fields on protein_out.pdb?

  #150 opened 6 months ago by carajillu
  3

• dpocket and multiple ligands on a single pdb file

  #148 opened 7 months ago by achernom
  0

• Segmentation fault running mdpocket

  #146 opened 7 months ago by jana-hor
  0

• Problems with the size of the input file name in mdpocket

  #145 opened 8 months ago by dgozgulbas
  0

• Problems with the size of the input file name

  #130 opened a year ago by aguus8
  3

• MDpocket giving out volume as zero for some snapshots in the trajectory

  #138 opened 9 months ago by AyyubRehman
  1

• Is it possible to get the actual pocket definition from `dpocket`?

  #143 opened 9 months ago by janjoswig
  0

• README example does not work for running fpocket in a docker container

  #135 opened 9 months ago by czabriskie
  3

• Non ASCII character in atom_site.type_symbol written in pocket files

  #141 opened 9 months ago by PeyratG
  2

• Hexadecimal `_atom_site.id` are written instead of decimal numbers

  #142 opened 9 months ago by PeyratG
  1

• malloc failed — fpocket 4.0 on Mac (OS X ventura, Intel iMac, 32GB)

  #137 opened 9 months ago by drawoliver
  2

• Output cif with protein and pocket doesn't containg the types of alpha spheres

  #120 opened a year ago by pschmidtke
  0

• Specify output directory with fpocket.

  #104 opened 2 years ago by egurapha
  1

• dpocket on apo-structures

  #102 opened 2 years ago by fgentile89
  3

• Only tiny pockets are found when running on 8g9b without HETATM records

  #134 opened 10 months ago by pschmidtke
  4

• Insertion codes are missing from .cif pocket files generated by fpocket

  #129 opened a year ago by PeyratG
  2

• Error when compiling on MacOS

  #131 opened a year ago by aramdbs
  1

• Conda and Mamba Installation Problem. Urgent!

  #123 opened a year ago by drorhunvural
  6

• Chain names longer than two characters

  #107 opened a year ago by nurulnad
  7

• Issue processing mmcif+ structure

  #127 opened a year ago by pschmidtke
  5

• Standardize error outputs

  #124 opened a year ago by xvlaurent
  3

• Visualizing and selecting indivual pockets through pymol

  #122 opened a year ago by dim-99
  1

• <mdpocket> analysing snapshot 46! No Pockets Found while refining

  #92 opened a year ago by H-EKE
  7

• MDpocket protein-protein complex error #question

  #103 opened a year ago by H-EKE
  0

• fpocket fails to run on a mmcif file with customized fields

  #119 opened a year ago by PeyratG
  1

• mdpocket on aligned AMBER trajectory in pdb format

  #93 opened a year ago by debarati31
  1

• Wrong folder used for output files with fpocket [debian:11-slim]

  #108 opened a year ago by odemengeon
  3

• Wrong Comments in the code

  #115 opened a year ago by ichiharakazuma
  1

• Segmentation fault error with -P flag

  #105 opened a year ago by tugceoruc
  4

• On 6cs2 pockets on chain D are not detected

  #113 opened a year ago by pschmidtke
  1

• Unable to run fpocket due to missing stdlibc++ libraries

  #98 opened 2 years ago by RC-2000
  1

• Running fpocket on Compute Canada

  #99 opened a year ago by RC-2000
  2

• Problem compiling fpocket 4.1

  #100 opened a year ago by xavgit
  5

• mdpocket libnetcdf.so.15 error

  #95 opened a year ago by anicoli
  1

• Can I use fpocket to generate cavity spheres?

  #111 opened a year ago by DipeshSomvanshi
  1

• Reformat Info Text Output into Json Format

  #110 opened a year ago by Spill-Tea
  1

• Wrong fpocket menu when testing the command

  #112 opened a year ago by FerrarV
  1

• MDpocket output not complete

  #94 opened 2 years ago by debarati31
  1

• dpocket-pocket volume reduces in the presence of HETATMs

  #101 opened 2 years ago by Peter-obi
  0

• *

  #96 opened 2 years ago by danplischke
  1

• pdbxplugin) ERROR: could not reallocate bonds array.

  #91 opened 2 years ago by amin-sagar
  0