Djeppschmidt
Microbiologist, Ecologist, Agriculturalist, R Shiny.
University of MarylandCollege Park, MD
Pinned Repositories
ARAGOG
International synthesis collaboration: effect of agricultural subsidy on env. outcomes
CCAltruism
Agent based model of community coherence as a function of altruism and environmental harshness
Djeppschmidt
Config files for my GitHub profile.
DJEppSchmidt.github.io
FSP1
Paper 1 from the farming systems project
GLUSEEN
GLUSEEN_2
chapter 2 of GLUSEEN saga
mgrastr
R package for accessing mg-rast annotation data
Model.Microbiome
SequenceSOP
Package for sequence QC and annotation pipeline
Djeppschmidt's Repositories
Djeppschmidt/ARAGOG
International synthesis collaboration: effect of agricultural subsidy on env. outcomes
Djeppschmidt/CCAltruism
Agent based model of community coherence as a function of altruism and environmental harshness
Djeppschmidt/Djeppschmidt
Config files for my GitHub profile.
Djeppschmidt/DJEppSchmidt.github.io
Djeppschmidt/FSP1
Paper 1 from the farming systems project
Djeppschmidt/GLUSEEN
Djeppschmidt/GLUSEEN_2
chapter 2 of GLUSEEN saga
Djeppschmidt/mgrastr
R package for accessing mg-rast annotation data
Djeppschmidt/Model.Microbiome
Djeppschmidt/SequenceSOP
Package for sequence QC and annotation pipeline
Djeppschmidt/ModelMicrobiome
Djeppschmidt/Plant-Health-Project
Djeppschmidt/ProkaryoteGeneAnnotation
This repository provides a customizable pipeline to access and summarize all whole genome annotations for prokaryotic genome assemblies hosted on GenBank and RefSeq. It also contains some functions for visualizing important characteristics of your dataset prior to annotation.
Djeppschmidt/ProkaryoteGeneAnnotation_tutorial
tutorial webpage
Djeppschmidt/QSeq
QSeq package and functions for microbiome analysis
Djeppschmidt/QSeq_Model
Analysis and models for QSeq paper