DrCoffey
Senior Fellow in Psychiatry & Behavior Sciences at University of Washington
John F. Neumaier Lab | UW Medicine300 9th Ave, Seattle WA, 98103
Pinned Repositories
3DMorph
3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of branch and end points.
DeepSqueak
DeepSqueak v3: Using Machine Vision to Accelerate Bioacoustics Research
fishFinder
G-Code-Generator
Creates G-code for stereotaxic robots
Manuscripts
A repository that contains code used to generate figures and statistics for my peer-reviewed manuscripts
Morphine-Microglia-Manuscript
NAPE-Computing-Tutorial-Codes
NAPE-Stats-Course
Code for NAPE Stats Course Exercises
Neurocience-Toolkit
Stereotaxic-Surgery-Robot
An open-souce stereotaxic surgery robot
DrCoffey's Repositories
DrCoffey/DeepSqueak
DeepSqueak v3: Using Machine Vision to Accelerate Bioacoustics Research
DrCoffey/fishFinder
DrCoffey/Stereotaxic-Surgery-Robot
An open-souce stereotaxic surgery robot
DrCoffey/3DMorph
3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of branch and end points.
DrCoffey/G-Code-Generator
Creates G-code for stereotaxic robots
DrCoffey/Manuscripts
A repository that contains code used to generate figures and statistics for my peer-reviewed manuscripts
DrCoffey/Morphine-Microglia-Manuscript
DrCoffey/NAPE-Computing-Tutorial-Codes
DrCoffey/NAPE-Stats-Course
Code for NAPE Stats Course Exercises
DrCoffey/Neurocience-Toolkit
DrCoffey/Oral-Fentanyl-Manuscript
Code and Data for the Oral Fentanyl Manuscript
DrCoffey/simba
SimBA (Simple Behavioral Analysis), a plug-and-play pipeline and GUI for developing behavioral classifiers
DrCoffey/Surgery-G-Codes
G-codes for the stereotaxic robot
DrCoffey/ViiA-7-Matlab
Get qPRC date into something readable
DrCoffey/VocalMat
Analysis of ultrasonic vocalizations from mice using computer vision and machine learning
DrCoffey/WGCNA