EGA-archive

European Genome-Phenome Archive

Pinned Repositories

beacon2-pi-api
Beacon v2 Production Implementation (API)
Language:Python0 3 24
beacon2-ri-api
Beacon v2 Reference Implementation (API)
Language:JavaScript16 9 7038
beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools)
Language:Perl7 4 109
crypt4gh
GA4GH cryptographic tools
Language:Python18 4 1612
crypt4gh-rust
Rust implementation for the Crypt4GH encryption format
Language:Rust5 5 32
ega-download-client
A Python-based EGA download client
Language:Python94 9 15452
ega-fuse-client
A Java/JNR based FUSE virtual file system client to provide access to authorized EGA files via the EGA Data REST API (v3)
Language:Java6 5 77
ega-quickview
FUSE file system to access EGA files securely and remotely
Language:C4 4 00
LocalEGA
A federated storage for sensitive data
Language:Python7 7 4716
ont2cram
Oxford Nanopore HDF/Fast5 to CRAM conversion tool
Language:Python22 8 202

EGA-archive's Repositories

EGA-archive/ega-download-client
A Python-based EGA download client
Language:Python94 9 15452
EGA-archive/crypt4gh
GA4GH cryptographic tools
Language:Python18 4 1612
EGA-archive/beacon2-ri-api
Beacon v2 Reference Implementation (API)
Language:JavaScript16 9 7038
EGA-archive/beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools)
Language:Perl7 4 109
EGA-archive/LocalEGA
A federated storage for sensitive data
Language:Python7 7 4716
EGA-archive/crypt4gh-rust
Rust implementation for the Crypt4GH encryption format
Language:Rust5 5 32
EGA-archive/ega-quickview
FUSE file system to access EGA files securely and remotely
Language:C4 4 00
EGA-archive/ega-data-api
Language:Java2 4 563
EGA-archive/beacon-verifier
Language:Rust1 2 0
EGA-archive/beacon2-ri-tools-v2
Language:Python1 2 265
EGA-archive/fega-metadata-schema
Repository dedicated to the development of the Federated EGA (FEGA) metadata schemas and documentation
1 2 01
EGA-archive/FEGA-Portals
Repository to track issues about FEGA Submission (UI & API) and Helpdesk portals
1 2 11
EGA-archive/beacon2-pi-api
Beacon v2 Production Implementation (API)
Language:Python0 3 24
EGA-archive/EuCanImage-FHIR
EuCanImage FHIR ETL
Language:Python00
EGA-archive/FEGA-onboarding
Collection of onboarding materials for establishing a Federated EGA Node.
Language:HTML0 5 2115
EGA-archive/refgenDetector
Tool to infer the human reference genome used to creat an alignment file.
Language:Python0 2 00
EGA-archive/allele-frequency-browser
Language:JavaScript2 0
EGA-archive/beacon-ri-documentation
Language:TypeScript2 0
EGA-archive/beacon-v2
Unified repository for the GA4GH Beacon v2 API standard
0 0
EGA-archive/beacon-verifier-v2
Language:Python2 0
EGA-archive/beacon2-ri-api-cancer
Beacon v2 Cancer Reference Implementation (API)
Language:Python0 0
EGA-archive/beacon2-ri-api-images
Beacon v2 Images Reference Implementation (API)
Language:JavaScript0 0
EGA-archive/beacon2-ri-ui
Language:JavaScript2 01
EGA-archive/EGA-auth
Linux NSS module for authentication of Federated EGA users
Language:C2 0
EGA-archive/ega-biomongo-tools
BioMongoDB is envisioned as a MongoDB database to facilitate the storage of information derived from various initiatives within the BioTeam.
Language:Python1 02
EGA-archive/ega-zuulproxy
A front end for the EGA data API. Required for ELIXIR integration. Provides Load Balancing, Traffic Shaping, Automated Retries.
Language:Java2 0
EGA-archive/la-marato-browser
Language:JavaScript
EGA-archive/LocalEGA-distribution
Distribution system for a Federated EGA node
Language:C2 0
EGA-archive/LocalEGA-inbox
OpenSSH dropbox, with remote user credentials and notifications for file system events
Language:Dockerfile4 11
EGA-archive/sarek-IMPaCT-data-QC
Implementation of the IMPaCT-data quality control workflow for WES data in nf-core/sarek workflow. Which is an analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing.
Language:Nextflow0 0