Cannot run Class2 in Daijin pipeline

[louphey]

Hi,

I'm using mikado v2.2.4.
I did not find out ​class = [ "",] in the [asm_methods] section of daijin.toml after configuring Daijin according to https://mikado.readthedocs.io/en/stable/Tutorial/Daijin_tutorial/
So I added ​class = [ "",] into the daijin.toml, then run daijin assemble --cores 30 daijin.toml.
Then I got the following error message.

2021-04-11 23:25:11,507 - main - main.py:79 - ERROR - main - MainProcess - Daijin crashed, cause:
2021-04-11 23:25:11,507 - main - main.py:80 - ERROR - main - MainProcess - {'asm_methods': {'class': ['Unknown field.']}}
Traceback (most recent call last):
File "/home/app/miniconda2/envs/mikado/lib/python3.8/site-packages/Mikado/daijin/main.py", line 70, in main
args.func(args)
File "/home/app/miniconda2/envs/mikado/lib/python3.8/site-packages/Mikado/daijin/assemble.py", line 53, in assemble_transcripts_pipeline
_ = DaijinConfiguration.Schema().load(doc)
File "/home/app/miniconda2/envs/mikado/lib/python3.8/site-packages/marshmallow_dataclass/init.py", line 578, in load
all_loaded = super().load(data, many=many, **kwargs)
File "/home/app/miniconda2/envs/mikado/lib/python3.8/site-packages/marshmallow/schema.py", line 725, in load
return self._do_load(
File "/home/app/miniconda2/envs/mikado/lib/python3.8/site-packages/marshmallow/schema.py", line 907, in _do_load
raise exc
marshmallow.exceptions.ValidationError: {'asm_methods': {'class': ['Unknown field.']}}

[ljyanesm]

Dear @louphey,

I have just created a branch where this issue is addressed, the parameter is now be named 'class2'

[lucventurini]

Thank you @ljyanesm for picking this up.

We probably need to update the documentation as well.

[ljyanesm]

I'll have a look if there's anything left to update there, I've just added a commit with some changes to the docs too, but haven't reviewed the text carefully yet