EI-CoreBioinformatics/mikado

Issues

• Unable to install mikado with mamba via multiple strategies

  #445 opened a year ago by isaacvock
  4

• ValueError and Invalid Target End Point Errors during Mikado Serialization

  #458 opened 4 months ago by joseph144155
  0

• serialise load BLAST data error (Cannot use a compiled regex as replacement pattern with regex=False)

  #457 opened 5 months ago by jolbi
  3

• Error with mikado serialise: 'Engine' object has no attribute 'cursor'

  #450 opened 8 months ago by bbista
  2

• Mikado pick does't add the CDS

  #455 opened 5 months ago by francicco
  0

• Assign transcripts to loci

  #452 opened 6 months ago by francicco
  0

• Error in mikado conda

  #451 opened 7 months ago by edugenetico
  0

• can't install Mikado by different ways

  #448 opened a year ago by mezoderma
  1

• Optimising Scoring file

  #446 opened 10 months ago by francicco
  12

• Error in rule asm_gff_stats

  #449 opened 10 months ago by jwli-code
  0

• Parameters to avoid overlap

  #447 opened a year ago by xiekunwhy
  0

• Error running serialise

  #442 opened a year ago by johannesnicolaus
  1

• scipy._build_utils is no longer available in scipy 1.10+

  #444 opened a year ago by boegel
  0

• Track gene/transcript ids

  #441 opened 2 years ago by francicco
  0

• bonus to the models, that are presented in several transcript assemblies

  #440 opened 2 years ago by sashulkaSh
  0

• Comparing two annotations

  #439 opened 2 years ago by AlexdeMendoza
  1

• error with running mikado

  #438 opened 2 years ago by ChemaMD
  3

• configuration error with mikado 2.3.2

  #437 opened 2 years ago by baozg
  1

• Designing specific scoring file

  #436 opened 2 years ago by allind
  1

• Best practice to use Mikado to score assembled lncRNA

  #435 opened 2 years ago by cc-prolix
  3

• OSError: [Errno 27] File too large

  #424 opened 2 years ago by NJeanray
  0

• Is there a way to update all transcript to complete gene models?

  #428 opened 2 years ago by xiekunwhy
  2

• Mikado and PASA+EVM

  #430 opened 2 years ago by sanyalab
  1

• Allow codon table to be set in mikado prepare

  #426 opened 2 years ago by swarbred
  3

• Configuration.yaml is empty

  #431 opened 2 years ago by bbista
  3

• [main_samview] fail to read the header from "-".

  #417 opened 2 years ago by NJeanray
  4

• Mikado crashed, cause: unhashable type: 'list'

  #432 opened 2 years ago by dadrasarmin
  2

• Mikado serialise sql3 error

  #429 opened 3 years ago by AlexdeMendoza
  3

• How to keep CDS information in input gtf files?

  #427 opened 3 years ago by xiekunwhy
  6

• Merge bams or each bam separately?

  #425 opened 3 years ago by xiekunwhy
  5

• Trinity doesn't give me any results

  #421 opened 3 years ago by NJeanray
  3

• sqlite3.IntegrityError during mikado serialise with blast homology

  #422 opened 3 years ago by JulienPPichon
  21

• mikdo pick throws this error and results in very few transcripts

  #415 opened 3 years ago by aseetharam
  12

• Testing the installed module UnicodeDecodeError

  #412 opened 3 years ago by bismarck1008
  1

• Prepare bug with lowercase bases

  #413 opened 3 years ago by swarbred
  0

• CAT to Mikado

  #403 opened 3 years ago by francicco
  8

• Using mikado to correct MAKER CDS sequences.

  #414 opened 3 years ago by keithforestdecker
  2

• Mikado using STAR : limitGenomeGenerateRAM

  #416 opened 3 years ago by NJeanray
  4

• bug in transcriptchecker.py at line 255

  #411 opened 3 years ago by cooketho
  3

• Missing coding regions

  #410 opened 3 years ago by francicco
  16

• 'list' object has no attribute 'finalize'

  #409 opened 3 years ago by francicco
  2

• Remove UTRs

  #405 opened 3 years ago by homonecloco
  2

• Error with logger on exptract_promoter

  #404 opened 3 years ago by homonecloco
  2

• Question about using Mikado with lncRNA annotations.

  #394 opened 4 years ago by cc-prolix
  2

• Cannot run Class2 in Daijin pipeline

  #401 opened 4 years ago by louphey
  3

• [BUG] Mikado crashes due to a bug in padding

  #395 opened 4 years ago by lucventurini
  1

• When the configuration is missing Mikado generates an unrelated error

  #396 opened 4 years ago by ljyanesm
  0

• Error in rule mikado_prepare

  #397 opened 4 years ago by louphey
  3

• Error in rule uncompress_genome

  #398 opened 4 years ago by louphey
  2

• serialise fails to load blast dbase .. can't find entries ... dictionary value error issue

  #392 opened 4 years ago by adamfreedman
  13