johannesnicolaus
PhD student at the Genomics and Regulatory Systems Unit, Okinawa Institute of Science and Technology
Okinawa Institute of Science and TechnologyJapan
Pinned Repositories
allaway2021
SE analysis of Allaway 2021 nature
ASURAT
ASURAT: Functional annotation-driven unsupervised clustering of single-cell transcriptomes
ASURAT_readme
ASURAT: Functional annotation-driven unsupervised clustering of single-cell transcriptomes
findfoci
ImageJ2 and R package for quantitative analysis of NF-κB foci
GTF_to_TSS
Extract TSS from ENSEMBL GTF FILE
nfcore-chipseq-atacseq-uvpbs
nfcore ATAC-seq and ChIP-seq pipeline template for IPR UV-PBS
nfcore-rnaseq-uvpbs
nfcore RNA-seq pipeline template for IPR UV-PBS
R_template
template for R project
rnaseq_viz
Visualization of normalized RNA-seq data using R Shiny app
Wibisana2021
Imaging and single cell sequencing analyses of super-enhancer activation mediated by NF-κB in B cells (Wibisana, JN et al., 2021)
johannesnicolaus's Repositories
johannesnicolaus/nfcore-chipseq-atacseq-uvpbs
nfcore ATAC-seq and ChIP-seq pipeline template for IPR UV-PBS
johannesnicolaus/nfcore-rnaseq-uvpbs
nfcore RNA-seq pipeline template for IPR UV-PBS
johannesnicolaus/R_template
template for R project
johannesnicolaus/allaway2021
SE analysis of Allaway 2021 nature
johannesnicolaus/ASURAT
ASURAT: Functional annotation-driven unsupervised clustering of single-cell transcriptomes
johannesnicolaus/findfoci
ImageJ2 and R package for quantitative analysis of NF-κB foci
johannesnicolaus/Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
johannesnicolaus/biomass
A Python Framework for Modeling and Analysis of Signaling Systems
johannesnicolaus/cutandtag_testrun
Test run for cut and tag data 2022/08/23. Osaka samples using H3K27me3 and IgG
johannesnicolaus/docker-texlive-full
A repository with a full texlive installation to be the base for my other texlive-related containers.
johannesnicolaus/GenomicBreaks
Pairwise Alignment Breakpoint Analysis
johannesnicolaus/homer-idr
Applying IDR analysis to Homer peaks.
johannesnicolaus/imagej_macro
色々ImageJ macro
johannesnicolaus/johannesnicolaus
johannesnicolaus/johannesnicolaus.github.io
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
johannesnicolaus/lab-website-template
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
johannesnicolaus/laudetu_pcrviz
Shiny app visualization tool for qPCR results
johannesnicolaus/LuscombeU-CAGE_libraries
Quality control and processing of CAGE libraries
johannesnicolaus/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
johannesnicolaus/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
johannesnicolaus/nf-core-chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
johannesnicolaus/oikobrowser_dropbox_autointegrate
Scripts needed for the automatic integration of files on dropbox to JSON config file for jbrowse2
johannesnicolaus/reactjs_tutorial
tutorial for learning react.js
johannesnicolaus/rstudio-hpc
johannesnicolaus/sallanu_dmwa_test
dental microwear analysis for terapods
johannesnicolaus/st_aligner_singularity
Singularity setup script for st_aligner
johannesnicolaus/tenshasolutions-hp
Tenshasolutions homepage
johannesnicolaus/test
johannesnicolaus/test_data_jbrowse2
test data for jbrowse2
johannesnicolaus/timecourse_planner
shiny app for planning time course experiments