Pinned Repositories
Augustus
Genome annotation with AUGUSTUS
BIND_annotation
Scripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)
braker
braker container
ClusterMonitor
Very simple script which logs the CPU and RAM usage of the submitted job.
common_scripts
my bin directory
data-science-ipython-notebooks
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
gatk
container for gatk tools
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
NSF-BioSketch-template
LaTex template for NSF biographical sketch
aseetharam's Repositories
aseetharam/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
aseetharam/ClusterMonitor
Very simple script which logs the CPU and RAM usage of the submitted job.
aseetharam/gatk
container for gatk tools
aseetharam/my_pizza
simple pizaa recipe, customized for my liking
aseetharam/RIA
Ancestry
aseetharam/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
aseetharam/3d-dna
3D de novo assembly (3D DNA) pipeline
aseetharam/aseetharam
profile
aseetharam/aseetharam.github.io
My personal webpage
aseetharam/awk_data_manipulation
using AWK to do some routine data manipulation
aseetharam/bagels
open source bagel recipe; let's raise the quality of bagels worldwide :bagel: :rocket:
aseetharam/BCB546X-python
aseetharam/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
aseetharam/git-demo
a simple git repository
aseetharam/intro_python
Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
aseetharam/Maize_WGS_Build
Code and Data to include in WGS Build
aseetharam/modern-unix
A collection of modern/faster/saner alternatives to common unix commands.
aseetharam/my-new-repo
my new repo
aseetharam/PANDAS-TUTORIAL
Jupyter Notebooks and Data Sets for Pandas Library
aseetharam/PhylDiag
docker container
aseetharam/r_docker
Docker container for genomics analyses in R.
aseetharam/r_phylogenetics_worshop
Using ggtree to build phylogenetic trees
aseetharam/rcac_rnaseq_workshop
aseetharam/scinet-site
The SCINet website for the USDA-ARS
aseetharam/SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
aseetharam/test
aseetharam/tome_code
The scripts used for the analyses in TOME project
aseetharam/tuteja-lab
aseetharam/tutorial_base
aseetharam/varnish
Template for pkgdown site