sanyalab

Hyderabad, India

Pinned Repositories

IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Language:Python160 12 23415
spades
SPAdes Genome Assembler
Language:C++798 32 1.2k146
hmmer
HMMER: biological sequence analysis using profile HMMs
Language:C337 11 27973
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
Language:Python596 16 518106
gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
Language:C++400 9 13941
stringtie
Transcript assembly and quantification for RNA-Seq
Language:C++420 29 45079
AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
Language:Perl494 45 35058
bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Language:Shell168 4 345
DRAGO2-API
http://prgdb.org
Language:Shell0 0 00
MLDL
Python Code repository applicable for ML, DL uses in genomics, and bioinformatics
0 1 00

sanyalab's Repositories

sanyalab/DRAGO2-API
http://prgdb.org
Language:Shell0 0 00
sanyalab/MLDL
Python Code repository applicable for ML, DL uses in genomics, and bioinformatics
0 1 00