Pinned Repositories
IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
spades
SPAdes Genome Assembler
hmmer
HMMER: biological sequence analysis using profile HMMs
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
stringtie
Transcript assembly and quantification for RNA-Seq
AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
DRAGO2-API
http://prgdb.org
MLDL
Python Code repository applicable for ML, DL uses in genomics, and bioinformatics
sanyalab's Repositories
sanyalab/DRAGO2-API
http://prgdb.org
sanyalab/MLDL
Python Code repository applicable for ML, DL uses in genomics, and bioinformatics