oushujun/EDTA

Issues

• NO SINE,EDTA v2.2.0

  #509 opened a month ago by Apl-cc
  9

• Test is failing after install

  #517 opened 13 days ago by etwatson
  1

• error in Identify TIR candidates

  #516 opened 15 days ago by qfh20m20m
  1

• LAI values could not be calculated

  #515 opened 15 days ago by sunshichao0916
  2

• How to install EDTA?

  #497 opened a month ago by zyy36920
  7

• No chromosome_density_plots.pdf

  #514 opened 23 days ago by bijendrabio
  1

• Error with add -w $genome_file_real_path.EDTA.raw/TIR

  #512 opened 25 days ago by lpzoaa
  0

• "long_terminal_repeat" vs "LTR_retrotransposon"

  #511 opened 24 days ago by G-Thomson
  1

• Request for Software Recommendations for Protein Annotation

  #513 opened 25 days ago by Flooooooooooooower
  0

• CrossmatchSearchEngine::parseOutput issue

  #479 opened 4 months ago by cai1991
  5

• can't find LTR and NO SINE on Split Genome

  #510 opened a month ago by rr9002
  1

• awk: fatal: cannot open file `genome.fa.mod.pass.list' for reading: No such file or directory

  #490 opened 3 months ago by Dorrie1041
  2

• several issues in the ruuning of EDTA2

  #466 opened 6 months ago by yanyew
  1

• .mod.EDTA.TEanno.sum was empty

  #471 opened a month ago by Jimpann97
  1

• Locate source of annotation

  #470 opened a month ago by fungal-spore
  1

• Evirus/ERTBV-C not found in the TE_SO database

  #473 opened a month ago by SC-Duan
  1

• An error when running ‘test’, probably related to 'bedtools'

  #489 opened 3 months ago by liangchengbo
  17

• LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.

  #491 opened a month ago by liangchengbo
  3

• cannot create temporary file in '/scratch/363641.1.all.q

  #501 opened a month ago by bijendrabio
  2

• EDTA_2.2.x.yml relies on anaconda channel

  #500 opened 3 months ago by SwiftSeal
  4

• Test file failed

  #469 opened a month ago by xiaoxiao349
  1

• ValueError: File format not supported

  #484 opened a month ago by jwli-code
  6

• singularity ERRO

  #485 opened a month ago by jwli-code
  5

• EDTA.pl 1.9版本，转换成EDTA.pl 2.2版本哪些过程可以跳过；

  #499 opened a month ago by LengFeng00
  2

• TIR-Learner error

  #505 opened a month ago by qfh20m20m
  2

• No space left on device

  #481 opened a month ago by ycgong
  3

• combine_RMrows.pl erro

  #498 opened 3 months ago by jwli-code
  1

• LTR not found in plant genome

  #502 opened a month ago by LeoVincenzi
  1

• Invalid value for shared scalar at /public/home/kanaconda3/envs/edta/share/LTR_retriever/bin/LT

  #507 opened a month ago by Hanjiangna
  1

• How to continue running make_panTElib.pl

  #503 opened 2 months ago by Xuuuurj
  2

• Chr9 of Rice(NIP) 4M do not have TE ?

  #508 opened 2 months ago by GooLey1025
  2

• Error: Error while loading sequence perl filter_gff3.pl file.gff3 file.list > new.gff3

  #506 opened 2 months ago by huaixiaolu
  1

• EDTA_raw.pl LINE analysis stalls

  #504 opened 2 months ago by afurches
  2

• TIR-Learner error

  #478 opened 3 months ago by amandine-velt
  5

• Warning: LOC list - is empty

  #483 opened 4 months ago by wangyangXie
  7

• gff2bed.pl doesn't recognize "snRNA" repeat class; leads to an empty .sum file

  #494 opened 3 months ago by malia-is-a-squid
  1

• Repeat masker stalling

  #480 opened 4 months ago by yanarizzieri
  3

• unknown/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.

  #493 opened 3 months ago by jwli-code
  0

• test data

  #468 opened 3 months ago by wwenc
  6

• For the RepeatModeler step why throw logs to 2>null?

  #464 opened 3 months ago by Isoris
  1

• Using CDS from multiple species

  #465 opened 6 months ago by bijendrabio
  1

• Can I concatenate EDTA library and Repbase library manually?

  #472 opened 5 months ago by Marh32
  1

• ERROR: Identify TIR candidates from scratch

  #482 opened 4 months ago by Lee951108
  3

• NestTE out

  #488 opened 4 months ago by porkfan
  2

• How to identify the structure feature of a TE sequence

  #486 opened 4 months ago by leon945945
  1

• When I run PanEDTA, it seems to rerun EDTA from scratch for each chromosome instead of starting the merging process directly.

  #487 opened 4 months ago by dongaoqian
  0

• Error: The RMblast engine is not installed in RepeatMasker!

  #474 opened 4 months ago by tallnuttrbgv
  1

• singularity install not working

  #476 opened 4 months ago by tallnuttrbgv
  1

• singularity install takes >18 hours / freezes

  #475 opened 4 months ago by tallnuttrbgv
  1

• Same ID for LTR-RT _LTR and _INT families in panEDTA

  #477 opened 4 months ago by lanasushko
  0