harta55/EnTAP

Issues

• Version1.1.1: interproscan database error

  #85 opened 3 months ago by AlexGaithuma
  4

• DIAMOND database error

  #92 opened 6 months ago by pavlo888
  11

• EnTAP database locations in the Docker image

  #66 opened a year ago by dence
  10

• Error in reading Serialized EnTAP database

  #13 opened a year ago by chani118
  4

• Adding Ref-seq diamond database for EnTAP

  #97 opened 5 months ago by Artifice120
  3

• Using conda with EnTAP

  #38 opened 6 months ago by MattHuff
  5

• Time savers: Re-running the pipeline

  #47 opened 6 months ago by AlexGaithuma
  1

• Error Code 161 (EggNog?)

  #30 opened 6 months ago by Aciole-David
  3

• Too many gene(transcript)-GO pairs

  #41 opened 6 months ago by xiekunwhy
  3

• Not downloading databases during config step

  #46 opened 6 months ago by incoreygible
  2

• New release: Error in ini file

  #83 opened 6 months ago by AlexGaithuma
  6

• New release: config fail

  #84 opened 6 months ago by AlexGaithuma
  3

• Error code : 12 occurring in the Docker image.

  #89 opened 6 months ago by kodai-kishino
  0

• Error code: 141

  #88 opened 7 months ago by baeyoungchoi
  2

• TransDecoder in Docker is missing perl dependency DB_File and URI::Escape

  #80 opened 7 months ago by WaljaWanney
  3

• Cleaner installation on linux systems

  #74 opened 8 months ago by sanyalab
  2

• Only entap_results.tsv has the results

  #75 opened 9 months ago by sanyalab
  1

• GO term file written entirely to a single line

  #67 opened a year ago by nreid
  1

• Segmentation fault

  #20 opened a year ago by zhangrengang
  10

• Issues with EnTAP v0.10.8 documentation + configuration bugs?

  #37 opened a year ago by vragh
  15

• EnTAP Database Error: Unable to download GO data

  #48 opened a year ago by wuxingbo1986
  1

• Fresh install: Running test_data; errors in Transdecoder

  #43 opened a year ago by hans-vg
  5

• test pipeline for singularity

  #65 opened a year ago by sivasubramanics
  0

• Reminder about Flask branch

  #60 opened a year ago by spficklin
  2

• Indexed DIAMOND databases in the ini file

  #45 opened a year ago by cliftonlewis
  1

• Parse error when configuring

  #42 opened a year ago by fka21
  3

• BUG: EnTAP v0.10.8 duplicate seq entries in final_results/*.fnn and *.faa

  #44 opened a year ago by hans-vg
  2

• EnTAP v0.9.2-beta Incompatible with emapperdb-5.0.0

  #11 opened 5 years ago by selveyad
  4

• How do I set --taxon via the command line?

  #32 opened 4 years ago by vragh
  3

• Using SQLite Database

  #25 opened 4 years ago by spficklin
  2

• Can EnTAP use for prokaryotic?

  #39 opened 4 years ago by xiekunwhy
  1

• frame selection on amino acid fasta file

  #8 opened 6 years ago by bioinfo17
  2

• Add an option to disable graphing.

  #40 opened 4 years ago by xiekunwhy
  1

• Broken EggNOG URL

  #10 opened 5 years ago by bruvellu
  3

• support for Salmon or Kallisto

  #16 opened 4 years ago by dy-lin
  1

• Support for feature table output

  #23 opened 4 years ago by alextrouerntrend
  0

• Interproscan won't run with threads number i set

  #29 opened 4 years ago by lizihe21
  1

• No alignments in 1 diamond database halts entire pipeline

  #33 opened 4 years ago by dy-lin
  1

• When adding a database for another run through, EnTAP doesn't like the headers it created

  #12 opened 4 years ago by selveyad
  1

• commandline arguments

  #15 opened 4 years ago by dy-lin
  1

• What is the actual information for "KEGG Terms (EggNOG)"?

  #27 opened 4 years ago by Aciole-David
  3

• Error code (106)

  #28 opened 4 years ago by guyleonard
  1

• Set Diamond e-value/score

  #26 opened 4 years ago by Aciole-David
  1

• Add --no_refine_starts option for Transdecoder

  #24 opened 4 years ago by Aciole-David
  2

• add step to strip end of TransDecoder protein sequences of * (stop codon)

  #22 opened 4 years ago by dy-lin
  4

• taxon no longer recognized

  #21 opened 4 years ago by dy-lin
  2

• boost::bad_any_cast: failed conversion using boost::any_cast

  #18 opened 4 years ago by dy-lin
  5

• Error opening file /test_data/entap_outfiles/transcriptomes//trinity.faa/trinity_final.fasta

  #19 opened 4 years ago by zhangrengang
  1

• TransDecoder -> DIAMOND bug

  #17 opened 4 years ago by dy-lin
  1

• error::too_many_columns

  #7 opened 6 years ago by Asoorni
  4