Pinned Repositories
busco_hmms_for_anvio
Making BUSCO HMMs useable in Anvi'o.
gene_prediction_pipeline
Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS
genomics_adventure
Workshop on Genomics - Genomics Adventure
get_ensembl_genomes
A quick and easy way to download the genomes/predicted proteins of taxa available from ENSEMBL Genomes
get_jgi_genomes
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
jsPhyloSVG
orthomcl_tools
A couple of tools I find indispensable for post orthomcl down-stream analysis.
refgen
A time-saving tool to change the 'defline' of FASTA files for a range of phylogenetic programs e.g. ClustalX, MrBayes, PhyML
sagawe
:white_circle: :arrow_right: :mag: :information_source: A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
guyleonard's Repositories
guyleonard/genomics_adventure
Workshop on Genomics - Genomics Adventure
guyleonard/get_jgi_genomes
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
guyleonard/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
guyleonard/orthomcl_tools
A couple of tools I find indispensable for post orthomcl down-stream analysis.
guyleonard/busco_hmms_for_anvio
Making BUSCO HMMs useable in Anvi'o.
guyleonard/get_ensembl_genomes
A quick and easy way to download the genomes/predicted proteins of taxa available from ENSEMBL Genomes
guyleonard/sagawe
:white_circle: :arrow_right: :mag: :information_source: A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
guyleonard/blastocladiella
The genome of Blastocladiella emersonii
guyleonard/evomics_2019
Creating the Virtual Machine (AMI) for the evomics.org Workshops
guyleonard/genome_crossovers
Which genomes are where in the big DBs?
guyleonard/orchard
:seedling: :clipboard: :arrow_right: :8ball: :arrow_right: :palm_tree: :evergreen_tree: :deciduous_tree: - A quick phylogenetic tree building pipeline!
guyleonard/PR2-curation
PR2 curation: a shiny app version of the EukRef data curation pipeline
guyleonard/hyphochytrium
Data files belonging to the Hyphochytrium catenoides Genome Project
guyleonard/assembly-stats
Assembly statistic visualisation
guyleonard/beer_labels
a bunch of designs of labels for my homebrew beers
guyleonard/bioconda-recipes
Conda recipes for the bioconda channel.
guyleonard/evomics_2018
Creating the VM setup for the evomics.org Workshop on Genomics
guyleonard/hugo-academic
The personal website framework for Hugo. Demo at
guyleonard/markdown_readme
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
guyleonard/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
guyleonard/orchardDB
:apple: :deciduous_tree: A script to create and populate a local database of amino acid sequences combined with taxonomic information, the AA gene predictions can be retrieved from a variety of genome-portals and then used with the Orchard tree building pipeline.
guyleonard/paramecium
Scripts and data file for An RNAi-dependent punishment for algal elimination in a phototrophic endosymbiosis.
guyleonard/Phylogenomic-analysis
Useful scripts for conducting phylogenomic analyses.
guyleonard/PlanktoScope
Low-cost fluidic microscope for citizen science
guyleonard/protists.co.uk
guyleonard/tadpole-doctor.co.uk
guyleonard/tutorials
A few simple tutorials for our lab group sessions.
guyleonard/Ukraine
Help Ukraine - add ribbon with Ukraine flag into the website you manage, show the anti-war message to Russian users, or block them from your service.
guyleonard/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
guyleonard/web
Web content for Meren Lab