Pinned Repositories
bio.tilling
R scripts to plot/analyse coverage from BED files
biojs-vis-sam
BioJS visualizer for the SAM format.
PhdThesis
MyPhDThesis.
samtools-ruby
Binder of samtools for ruby, on the top of FFI.
subsampler
Small tool to subsample fasta and fastq files.
bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
bioruby-polyploid-tools
Library and tools to deal with polyploid genomics
expvip-web
expVIP. EXPression and VIsualisation Platform
pangenome-haplotypes
Scripts to do haplotype analysis on pan genomes.
pangenome-web
Web visualisation of regions identical by descent.
homonecloco's Repositories
homonecloco/bio.tilling
R scripts to plot/analyse coverage from BED files
homonecloco/biojs-vis-sam
BioJS visualizer for the SAM format.
homonecloco/bioruby-wheat-db
homonecloco/seqotron
Alignment editor for Mac OS X
homonecloco/AAfun
ASReml-R Added functions
homonecloco/academic-cv-publications
Generate a customised list of publications for your LaTeX CV using BibTeX entries.
homonecloco/affinity_hap
Predict haplotypes by affinity clustering algorithm
homonecloco/API
Repository for version control of the BrAPI specifications
homonecloco/arduino-distance
Arduino controller for two ultrasonic sensors, an LCD screen and basic serial communication.
homonecloco/bash_scripts
homonecloco/biojs-vis-chromosome-heatmap
Plots to make heat maps in chromosomes
homonecloco/bioruby-vcf
Smart VCF parser
homonecloco/Blight
De Bruijn graph representation in low memory
homonecloco/Brisk
Brisk Reduced Index for Sequence of K-mers
homonecloco/coding_club_example
Repository for coding club to experiment
homonecloco/CRIS.py
Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.
homonecloco/expvip-analysis
R scripts to analyse expression data.
homonecloco/FASTK
A fast K-mer counter for high-fidelity shotgun datasets
homonecloco/htslib
C library for high-throughput sequencing data formats
homonecloco/K2282_scripts
Scripts from the K2282 Mapping Paper
homonecloco/KMC
Fast and frugal disk based k-mer counter
homonecloco/kmersGWAS
A library for running k-mers based GWAS
homonecloco/kontaminant
homonecloco/metacortex
homonecloco/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
homonecloco/msa
Modular BioJS compoment for a multiple sequence alignment
homonecloco/plant_tools
Tools and documentation for Plants
homonecloco/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
homonecloco/sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
homonecloco/transcriptome_paper_supp_methods