EI-CoreBioinformatics/mikado

Remove UTRs

homonecloco opened this issue · 2 comments

homonecloco commented

I found another issue in the utilities.

% remove_utrs.py -f gff3 TraesCS1A02G418200.gff3 TraesCS1A02G418200_no_utr.gff3
Traceback (most recent call last):
  File "/usr/local/bin/remove_utrs.py", line 13, in <module>
    def strip_utr(gene: Mikado.loci.Gene):
AttributeError: module 'Mikado' has no attribute 'loci'
lucventurini commented

Instead of
import Mikado

import Mikado.loci
import Mikado.parsers

should solve the issue in that script.

ljyanesm commented

Fixed in 2.3.0