cooketho

Pinned Repositories

budgies
This repository contains code for reproducing the results from Cooke et al 2017
0 3 00
gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
Language:Java00
gbstools
Bioinformatics tools for reduced representation sequencing data
Language:Python11
GERMLINE
Linear time detection of Identity by Descent
Language:C++00
GRAAL
Software from Marie-Nelly et al., 2014 (High-quality genome assembly using chromosomal contact data)
Language:Python00
halplot
A program for plotting HAL (hierarchical alignment format) graphs
Language:C++11
jobTree
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
Language:Python00
LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
Language:C++00
progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
Language:Python00
LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
Language:C++76 9 6133

cooketho's Repositories

cooketho/gbstools
Bioinformatics tools for reduced representation sequencing data
Language:Python11
cooketho/halplot
A program for plotting HAL (hierarchical alignment format) graphs
Language:C++11
cooketho/budgies
This repository contains code for reproducing the results from Cooke et al 2017
0 3 00
cooketho/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
Language:Java00
cooketho/GERMLINE
Linear time detection of Identity by Descent
Language:C++00
cooketho/GRAAL
Software from Marie-Nelly et al., 2014 (High-quality genome assembly using chromosomal contact data)
Language:Python00
cooketho/jobTree
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
Language:Python00
cooketho/LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
Language:C++00
cooketho/progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
Language:Python00