ELELAB/LipidDyn

Issues

• Fix curvature calculation

  #160 opened 5 months ago by SimoneScrima
  0

• Add wrap option to be selected in the configuration yaml file

  #158 opened a year ago by MatteoLambrughi
  0

• Protein-lipid interaction module

  #150 opened a year ago by serestech
  0

• Scrambling module

  #155 opened a year ago by serestech
  0

• Lipid2MD need to include option form manual selection of lipids

  #153 opened a year ago by MatteoLambrughi
  0

• Updates for lipid2MD matching to classes

  #151 opened a year ago by laurakappel
  0

• Standard output and logging from module curvature is incorrect

  #147 opened 2 years ago by serestech
  0

• Include in Lipid2MD the conversion of lipidomics data in compositions for membrane models

  #142 opened 2 years ago by laurakappel
  0

• avoid rerunning existing analyses

  #88 opened 2 years ago by elenapapaleo
  0

• Add support on LipidDyn and Lipid2MD of MARTINI2

  #140 opened 2 years ago by MatteoLambrughi
  0

• Include in Lipid2MD the conversion of lipidomics data in compositions for membrane models

  #145 opened 2 years ago by laurakappel
  0

• Include in Lipid2MD the conversion of lipidomics data in compositions for membrane models

  #144 opened 2 years ago by laurakappel
  0

• Include in Lipid2MD the conversion of lipidomics data in compositions for membrane models

  #143 opened 2 years ago by laurakappel
  0

• Update Lipid2MD to support new version of pandas and numpy

  #136 opened 2 years ago by MatteoLambrughi
  0

• Fatslim does not support numpy > 1.24.0

  #133 opened 2 years ago by SimoneScrima
  1

• Removal of numpy.int class in recent NumPy versions

  #131 opened 2 years ago by serestech
  1

• membrane_curvature_implementation

  #106 opened 2 years ago by AlessiaCampo
  0

• LipidDyn: Vizualise lipid species contribution to membrane properties

  #125 opened 2 years ago by AnneRossen
  0

• Add support in the dictionary and Lipid2MD for the coarse grained Martini force fields

  #119 opened 2 years ago by MatteoLambrughi
  0

• Add calculation of average lipid density for leaflets and all membrane

  #127 opened 2 years ago by MatteoLambrughi
  0

• enrichment and membrane-only simulations

  #87 opened 2 years ago by elenapapaleo
  0

• LipidDyn: automize lipid2MD

  #124 opened 2 years ago by AnneRossen
  0

• Annotation of phosphatidylinositol phosphate species

  #112 opened 2 years ago by MatteoLambrughi
  0

• incorrect colorbar label

  #114 opened 2 years ago by JFadanni
  1

• IndexError: index 327 is out of bounds for axis 0 with size 306

  #110 opened 2 years ago by hopanoid
  2

• Enrichment maps calculation

  #115 opened 2 years ago by JFadanni
  1

• Implementation MD dictionary

  #108 opened 2 years ago by SimoneScrima
  0

• Merge raw data from Fatslim into a single readable file

  #53 opened 2 years ago by SimoneScrima
  0

• ordpar plotting: min/max option should be set

  #104 opened 3 years ago by AlessiaCampo
  0

• dmaps: plotting options improvement

  #101 opened 3 years ago by AlessiaCampo
  0

• plotting script for the order parameter (ordpar.py) on coarse grained/full-atom system

  #96 opened 3 years ago by MatteoLambrughi
  0

• Requirements missing in setup.py

  #68 opened 3 years ago by mtiberti
  1

• Update README and setup.py

  #79 opened 3 years ago by AlessiaCampo
  0

• Fix test cases plots

  #94 opened 3 years ago by SimoneScrima
  0

• fix diffusion plots

  #92 opened 3 years ago by AlessiaCampo
  0

• adjust enrichment plots colormaps

  #90 opened 3 years ago by AlessiaCampo
  0

• Remove default empty folders for raw data

  #85 opened 3 years ago by AlessiaCampo
  0

• Reform the test case folder

  #84 opened 3 years ago by SimoneScrima
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• Extend support to MacOs

  #82 opened 3 years ago by SimoneScrima
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• Make the output folders location user selectable

  #69 opened 3 years ago by AlessiaCampo
  0

• Fixes APL and Thickness plots

  #71 opened 3 years ago by AlessiaCampo
  0

• Enrichment analysis output: create a .dat file for each leaflet

  #73 opened 3 years ago by AlessiaCampo
  0

• Reimplementation of enrchiment analysis

  #75 opened 3 years ago by AlessiaCampo
  0

• Implementation of OP for CG system

  #77 opened 3 years ago by AlessiaCampo
  0

• Definition Parameter missing last hydrogen in sn1/sn2

  #58 opened 3 years ago by SimoneScrima
  0

• config file in full-atom example is missing some residues

  #66 opened 3 years ago by mtiberti
  0

• The way we identify lipid leaflets uses hardcoded residue and atom names

  #61 opened 3 years ago by mtiberti
  0

• Test cases for coarse-grained system

  #62 opened 4 years ago by MatteoLambrughi
  1

• __init__.py missing from LipidDyn/ package directory

  #51 opened 4 years ago by SimoneScrima
  0

• Better way to handle packages in setup.py and MANIFEST.in

  #44 opened 4 years ago by SimoneScrima
  0