The error while BASALT installed with "conda env create -n BASALT --file basalt_env.yml"

Question

The error while BASALT installed with "conda env create -n BASALT --file basalt_env.yml"

Opened this issue 6 months ago · 4 comments

ggezwp123 commented 6 months ago

conda env create -n BASALT --file basalt_env.yml
Channels:

https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
linbin203
bioconda
conda-forge
defaults
https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed
Channels:
https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
linbin203
bioconda
conda-forge
defaults
https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:

package basalt-1.0.1-0 requires tqdm 4.64.1.*, but none of the providers can be installed
package biopython-1.76-py37h516909a_0 is excluded by strict repo priority
package c-ares-1.19.1-h5eee18b_0 is excluded by strict repo priority
package htslib-1.9-h244ad75_9 requires libdeflate >=1.3,<1.21.0a0, but none of the providers can be installed
package pyasn1-modules-0.2.8-py_0 is excluded by strict repo priority
package r-catools-1.17.1.4-r35h0357c0b_0 is excluded by strict repo priority
package r-gplots-3.0.3-r35h6115d3f_0 is excluded by strict repo priority
package rsa-4.7.2-pyhd3eb1b0_1 is excluded by strict repo priority
package _libgcc_mutex-0.1-conda_forge is excluded by strict repo priority
package _openmp_mutex-4.5-2_gnu is excluded by strict repo priority
package binutils_impl_linux-64-2.36.1-h193b22a_2 is excluded by strict repo priority
package binutils_linux-64-2.36-hf3e587d_33 is excluded by strict repo priority
package diamond-2.0.4-h56fc30b_0 requires boost-cpp >=1.70.0,<1.70.1.0a0, but none of the providers can be installed
package brotli-python-1.0.9-py37hd23a5d3_7 is excluded by strict repo priority
package bwidget-1.9.14-ha770c72_1 is excluded by strict repo priority
package bzip2-1.0.8-h7f98852_4 is excluded by strict repo priority
package ca-certificates-2023.5.7-hbcca054_0 is excluded by strict repo priority
package cairo-1.14.12-h80bd089_1005 is excluded by strict repo priority
package certifi-2023.5.7-pyhd8ed1ab_0 is excluded by strict repo priority
package cffi-1.14.4-py37h11fe52a_0 is excluded by strict repo priority
package click-7.1.2-pyh9f0ad1d_0 is excluded by strict repo priority
package colorama-0.4.6-pyhd8ed1ab_0 is excluded by strict repo priority
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package cudatoolkit-11.8.0-h37601d7_11 is excluded by strict repo priority
package cudnn-8.8.0.121-h0800d71_1 is excluded by strict repo priority
package curl-7.68.0-hf8cf82a_0 is excluded by strict repo priority
package cycler-0.11.0-pyhd8ed1ab_0 is excluded by strict repo priority
package cython-0.29.32-py37hd23a5d3_0 is excluded by strict repo priority
package expat-2.5.0-hcb278e6_1 is excluded by strict repo priority
package fontconfig-2.14.2-h14ed4e7_0 is excluded by strict repo priority
package freetype-2.12.1-hca18f0e_1 is excluded by strict repo priority
package future-0.18.2-py37h89c1867_5 is excluded by strict repo priority
package gawk-5.1.0-h7f98852_0 is excluded by strict repo priority
package gcc_impl_linux-64-7.5.0-habd7529_20 is excluded by strict repo priority
package gcc_linux-64-7.5.0-h47867f9_33 is excluded by strict repo priority
package gettext-0.21.1-h27087fc_0 is excluded by strict repo priority
package gfortran_impl_linux-64-7.5.0-h56cb351_20 is excluded by strict repo priority
package gfortran_linux-64-7.5.0-h78c8a43_33 is excluded by strict repo priority
package giflib-5.2.1-h0b41bf4_3 is excluded by strict repo priority
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package glpk-5.0-h445213a_0 is excluded by strict repo priority
package gmp-6.2.1-h58526e2_0 is excluded by strict repo priority
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package gsl-2.6-he838d99_2 is excluded by strict repo priority
package gxx_impl_linux-64-7.5.0-hd0bb8aa_20 is excluded by strict repo priority
package gxx_linux-64-7.5.0-h555fc39_33 is excluded by strict repo priority
package harfbuzz-1.9.0-he243708_1001 is excluded by strict repo priority
package humanfriendly-10.0-py37h89c1867_2 is excluded by strict repo priority
package icu-58.2-hf484d3e_1000 is excluded by strict repo priority
package joblib-1.3.0-pyhd8ed1ab_1 is excluded by strict repo priority
package jpeg-9e-h0b41bf4_3 is excluded by strict repo priority
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package krb5-1.16.4-h2fd8d38_0 is excluded by strict repo priority
package lcms2-2.12-hddcbb42_0 is excluded by strict repo priority
package ld_impl_linux-64-2.36.1-hea4e1c9_2 is excluded by strict repo priority
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package libgfortran-ng-7.5.0-h14aa051_20 is excluded by strict repo priority
package libgfortran4-7.5.0-h14aa051_20 is excluded by strict repo priority
package libgomp-13.1.0-he5830b7_0 is excluded by strict repo priority
package libiconv-1.17-h166bdaf_0 is excluded by strict repo priority
package libidn2-2.3.4-h166bdaf_0 is excluded by strict repo priority
package libpng-1.6.39-h753d276_0 is excluded by strict repo priority
package libprotobuf-3.16.0-h780b84a_0 is excluded by strict repo priority
package libssh2-1.10.0-haa6b8db_3 is excluded by strict repo priority
package libstdcxx-devel_linux-64-7.5.0-hb016644_20 is excluded by strict repo priority
package spades-3.15.5-h95f258a_1 requires libstdcxx-ng >=12, but none of the providers can be installed
package libtiff-4.2.0-hf544144_3 is excluded by strict repo priority
package libunistring-0.9.10-h7f98852_0 is excluded by strict repo priority
package libuuid-2.38.1-h0b41bf4_0 is excluded by strict repo priority
package libwebp-base-1.3.1-hd590300_0 is excluded by strict repo priority
package libxcb-1.15-h0b41bf4_0 is excluded by strict repo priority
package llvm-openmp-8.0.1-hc9558a2_0 is excluded by strict repo priority
package magma-2.5.4-hc72dce7_4 is excluded by strict repo priority
package make-4.3-hd18ef5c_1 is excluded by strict repo priority
package matplotlib-base-3.4.2-py37hdd32ed1_0 is excluded by strict repo priority
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package pysocks-1.7.1-py37h89c1867_5 is excluded by strict repo priority
package python-dateutil-2.8.2-pyhd8ed1ab_0 is excluded by strict repo priority
package pytorch-1.9.0-cuda112py37hcb91bf2_1 is excluded by strict repo priority
package pytz-2023.3-pyhd8ed1ab_0 is excluded by strict repo priority
package pyyaml-6.0-py37h540881e_4 is excluded by strict repo priority
package readline-7.0-hf8c457e_1001 is excluded by strict repo priority
package scipy-1.4.1-py37ha3d9a3c_3 is excluded by strict repo priority
package setuptools-68.0.0-pyhd8ed1ab_0 is excluded by strict repo priority
package six-1.16.0-pyh6c4a22f_0 is excluded by strict repo priority
package sleef-3.5.1-h9b69904_2 is excluded by strict repo priority
package suitesparse-5.10.1-h9e50725_1 is excluded by strict repo priority
package bowtie2-2.5.1-py37hb24965f_1 requires tbb >=2021.9.0, but none of the providers can be installed
package tk-8.6.12-h27826a3_0 is excluded by strict repo priority
package tktable-2.10-hb7b940f_3 is excluded by strict repo priority
package tornado-6.2-py37h540881e_0 is excluded by strict repo priority
package typing-extensions-4.7.1-hd8ed1ab_0 is excluded by strict repo priority
package typing_extensions-4.7.1-pyha770c72_0 is excluded by strict repo priority
package wget-1.20.3-ha56f1ee_1 is excluded by strict repo priority
package wheel-0.40.0-pyhd8ed1ab_0 is excluded by strict repo priority
package xorg-xproto-7.0.31-h7f98852_1007 is excluded by strict repo priority
package yaml-0.2.5-h7f98852_2 is excluded by strict repo priority
package zlib-1.2.13-hd590300_5 is excluded by strict repo priority
package zstd-1.5.2-hfc55251_7 is excluded by strict repo priority
package _r-mutex-1.0.1-anacondar_1 is excluded by strict repo priority
package _sysroot_linux-64_curr_repodata_hack-3-h69a702a_13 is excluded by strict repo priority
package cuda-version-11.8-h70ddcb2_2 is excluded by strict repo priority
package kernel-headers_linux-64-3.10.0-h4a8ded7_13 is excluded by strict repo priority
package sysroot_linux-64-2.17-h4a8ded7_13 is excluded by strict repo priority
package texttable-1.6.7-pyhd8ed1ab_0 is excluded by strict repo priority
package arpack-3.7.0-hc6cf775_2 is excluded by strict repo priority
package tensorboardx-2.5.1-pyhd8ed1ab_0 is excluded by strict repo priority
package tensorboard-2.10.0-py37h06a4308_0 requires requests >=2.21.0,<3, but none of the providers can be installed
package metabinner-1.4.4-hdfd78af_0 requires scikit-learn 0.22.1.*, but none of the providers can be installed

Could you help me sovle it? THANK YOU!!!

Answer 1 · 2024-08-03T05:15:27.000Z

try to use mamba?

Answer 2 · 2024-09-24T15:54:31.000Z

Any update on this? This is something I run into as well. Does mamba work ok for people?

Answer 3 · 2024-10-06T16:12:34.000Z

The problem on my side is that conda's strict repository priority prevents packages from being installed from lower priority sources. You can try disabling this option to allow conda to find packages from other sources:
conda config --set channel_priority flexible
conda env create -f basalt_env.yml

Answer 4 · 2024-12-13T13:54:42.000Z

Any update on this? This is something I run into as well. Does mamba work ok for people?

Not for me.