/Bins_Refinement

Primary LanguagePythonApache License 2.0Apache-2.0

Readme

These scripts allow you to refine the genomes generated by the three binning software programs including MaxBin2, MetaBAT and CONCOCT.

Instructions

  1. Use S1_BinsAbundance_PE_connections.py to refine bins by PE Tracing.
  2. Use S2_Bins_comparator_within_group.py to choose the best bins from each binning software.
  3. Use S3_Multiple_Assembly_Comparitor.py to choose the best bins within three binning software.
  4. Use S4_Outlier_remover.py to refine the bins by removing contig.
  5. Use S5_Contig_retriever.py to refine the bins by retrieving contig.