ENCODE-DCC/chip-seq-pipeline2

parrallel proccessing with spp

louisgevirtzman opened this issue · 2 comments

I am confused with this line of code from encode_task_spp.py
nth_param = '-p={}'.format(nth) if nth < 2 else ''
should it be:
nth_param = '-p={}'.format(nth) if nth >= 2 else ''
when I run the pipeline with spp it does not seem to use multiple threads

Thanks for reporting. This will be fixed in the next release.

Fixed in v2.1.5