ENCODE-DCC/long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

This pipeline has been deprecated in favor of https://github.com/ENCODE-DCC/rna-seq-pipeline.

It does have code for running RAMPAGE/CAGE experiments at DNA Nexus using https://github.com/nboley/rampage_pipeline if that is what you are looking for