EWisely
I'm a Genetics PhD student studying marine biodiversity. I love studying ecology and evolution and conservation biology of all animals from sponges to jaguars.
EWisely's Stars
sipost1/kraken2OTUtable
Creates a simple OTU table from Kraken2 report.
z0on/RDA-forest
association analysis of distance matrices using gradient forest approach
EricArcher/rfPermute
Estimate Permutation p-Values for Random Forest Importance Metrics
adeflamingh/de_Flamingh_et_al_lionteeth_hair
ellieearmstrong/mPCRselect
Ancestry and individual ID SNP selection pipeline.
hmsc-r/HMSC
pierrebarbera/epa-ng
Massively parallel phylogenetic placement of genetic sequences
sebametz/perkinsea_distribution
ZimmermannHH/BeringSea_shotgun_sequencing
Scripts for the compositional analysis of metagenomic shotgun sequencing data calssified by kraken2
gordy2x/ecoCopula
R package to find species interactions from co-occurrence data
invertdna/eDNA_Process_Simulations
Text and code for Kelly, Shelton, and Gallego 2019.
quicklizard99/cheddar
Analysis and visualisation of ecological communities in R
jcoliver/biodiversity-sdm-lesson
Introductory lesson to generate range maps for butterfly-host plant interactions and predict distributional shifts using publicly available biodiversity data and data science tools
marinebon/eDNA_microbes_whales
eDNA params files
dgarrimar/manta
Non-parametric, asymptotic P-value computation for multivariate linear models
gflow/GFlow
Software for modeling circuit theory-based connectivity
JenniNiku/gllvm
Generalized Linear Latent Variable Models
kpmainali/CooccurrenceAffinity
Computes affinity between two entities based on their co-occurrence
virginiemarques/Global_eDNA
Code to assemble all datasets of eDNA using MOTUs (Teleo) and explore diversity patterns
virginiemarques/GAPeDNA
genner-lab/meta-fish-lib
A generalised, dynamic DNA reference library for metabarcoding of fishes
mijangos81/PopGenR
Population Genomics in R workshop
TheWangLab/algatr
A Landscape Genomic Analysis Toolkit in R
sahwa/ChromoPainterV2
hellenthal-group-UCL/fastGLOBETROTTER
faster haplotype-based admixture inference and dating software
goodest-goodlab/pseudo-it
Beta version of the new pseudo-it software for iterative reference guided assemblies.
guyleonard/genomics_adventure
Workshop on Genomics - Genomics Adventure
jpwyoung/MAUI
Scripts for MAUI-seq metabarcoding analysis
mikessh/mageri
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
harvardinformatics/snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.